Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148295.1_202016-10-31]
1,680 sequences; 40,142,277 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq196 107 2e-18
seq1169 82.4 1e-10
>seq196
Length=40614
Score = 107 bits (118), Expect = 2e-18
Identities = 463/725 (64%), Gaps = 8/725 (1%)
Strand=Plus/Minus
Query 63188 TTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGA 63247
|||||||||||| || | | || | | | | ||| || || | || ||||| | |
Sbjct 19654 TTCGAACTCGTCACCGTAGATATCGGCAAGACCAGGGCACTCGTGAGGGCACATGAGAGT 19595
Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 63306
||| || || | | | || || ||||| || || || |||||||| | || ||| |
Sbjct 19594 CCAGTCGCCATTCTGTTCGACGCGCTTCATGAACAGGTCGGGAATCCACA-AGGCATAGA 19536
Query 63307 ATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63366
| ||||| | | | ||| || || || |||||| | ||||| | | |
Sbjct 19535 AAAGATCACGAGCACGCGCTTCTTCTTTGCCGTGGTTCTTTCTCAGATCTAACCAGTTGA 19476
Query 63367 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63426
| ||| | ||||| || || | ||| ||||| | | ||||| || ||||| || |
Sbjct 19475 AGACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAATGCACCAGGACGCTTGTTGCCAC 19416
Query 63427 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTG 63486
| ||||| | ||| | ||| || | | | || | | ||| |||| || |||||| |
Sbjct 19415 CTTGATCAACGTAGCGAGCAGTCGCGTCAAAGACACGGAGCATAGGAACAAGACCGTTCG 19356
Query 63487 ATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGAC 63546
|| | || || || || || || |||| |||| || || | || || |
Sbjct 19355 ATGTGCCGTTTGTTCCTCCAATGTATGATCCAGTGGCTCGGATGCGATGTATGTTAAGGC 19296
Query 63547 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTT 63606
| || || || || | || || || | || || || | ||||| ||||| || |
Sbjct 19295 CGATACCACCAGCGGTCTTTGAAATCATAGCACAAGTCTTGAGGGTGTCGTAGATACCCT 19236
Query 63607 CTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTC 63666
| ||||| || || || ||| || || || || || | ||| | ||| || |
Sbjct 19235 CGATGCTGTCCTCCTTCGTGTCAATGAGGAAGCAAGACGAGAGTTGCGGTTGAGGTGTGC 19176
Query 63667 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTGTAC 63725
| || || || | ||||| || |||||||| || |||| | ||| | |||| |||||
Sbjct 19175 CTGCGTTGAAAAGTGTAGGGGAGGCGTGCGTGAAGTATTTGTTAGACATGTAG-TTGTAT 19117
Query 63726 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 63785
|||| || || || || || ||| | ||||| || ||||| |||||||| | |||
Sbjct 19116 GTCTGTATGGCAGATTCAATGTCCTCTCCGTGAATGCCGACTGCCACACGCATGATCATA 19057
Query 63786 TGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 63845
|| || || | ||| | | ||| | ||||| | | ||| ||| |||| |||
Sbjct 19056 TGTTGTGGACGCTCAGCGACCTTGCCGCTTATTCGGAGTAGGTATGATCGCTCCAGAGTC 18997
Query 63846 TTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCT 63903
|| || ||||| || | ||| ||||| |||| ||||| | ||| | || || | ||
Sbjct 18996 TTGAAGCCAAAGTATTGGTAATTGAAA--TCTCTGTCGTATACAATGGCAGAGTTCAACT 18939
Query 63904 TATCC 63908
||||
Sbjct 18938 CATCC 18934
Score = 98.7 bits (108), Expect = 1e-15
Identities = 299/459 (65%), Gaps = 5/459 (1%)
Strand=Plus/Minus
Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105
||||| || ||||| || || || | | || || || ||||||||||| || || |||
Sbjct 20853 GTGAACTGGATGGGTGCTGAAGCAGCCATGGTTCGGAGGTAGTACATTCCAGTCTTGAGA 20794
Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62165
|| | |||| || ||| ||||| || | ||| |||| ||| ||
Sbjct 20793 CCCATCTTCCAACCAGCAAAGTGCATGGAAGTAATCTTGCCCATGGTCGGCTCTTTCATG 20734
Query 62166 TGGATATTCATAGAT-TGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 62224
|| || |||| || | ||| |||||| |||||||| || | || |||||||| | ||
Sbjct 20733 TGAATGTTCA-AGCTCTGAGATTGATCAATGAAGGCGCCACGATCCGCAGCCATGGTGAT 20675
Query 62225 GATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 62284
|| || || |||||||||| || || |||| ||| ||||| || ||||
Sbjct 20674 AATGGTACGCTGGCTGATTTCCCAAACCGTCTTGTAAAGGGCCTTGATATCATCGGGAAT 20615
Query 62285 GTTTGTA---TTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATT 62341
|| | | ||||| || || ||||| ||| | || || | |||||| || | ||
Sbjct 20614 ATTAGGAATGTTCTGGATAGAACCACCCTCTGCAATGATACGATTCTTCATGTTGTCCGA 20555
Query 62342 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCC 62401
||| | ||||| | | || | || || ||||| || ||||||||||| ||
Sbjct 20554 CCAAAGACCCATCTCGACGAGATCTTTGAGCAGCCATGGGTTGACGACTTGGAATTCCCC 20495
Query 62402 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCC 62461
|| | || | |||| ||| ||||| || || || || | |||| || ||
Sbjct 20494 AGCAAGCACACGACGAGAGTAGATATTTGACGTGTATGGCTCGAAGCACTCGTTGAAACC 20435
Query 62462 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCAC 62500
| |||||||| || || ||||| |||||||| || ||
Sbjct 20434 GAGAATTTGAGATGTGGAAGCAGTTGGCATAGGAGCAAC 20396
>seq1169
Length=73998
Score = 82.4 bits (90), Expect = 1e-10
Identities = 174/258 (67%), Gaps = 5/258 (2%)
Strand=Plus/Plus
Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938
|| ||||| |||||||| ||||| || ||||| ||||| || |||| || || | || |
Sbjct 49195 TCGGAATGGATGTTTTCCATGGCGATTTGAAAACCGTAAAAGCATCGGGCTTCTGGAACC 49254
Query 33939 TGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCA 33998
|| ||||| | | ||| ||||| | || || || || || ||||| |||||
Sbjct 49255 TGAACTTCGTTGCTAAAACGTTCGAGGAGGTTCTCGTTGACGATGCCATCCGATGCTGCG 49314
Query 33999 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA----GTTTATTCCA 34054
||||| || | | ||| || ||| | |||||| | ||| | || |||||
Sbjct 49315 AAAAATGCGAGAATGTGTGAGATGAAAAAGCGTTCGTC-GTCGTTCAGGCGGTTGTTCCA 49373
Query 34055 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 34114
|| | ||||| || | ||| | ||||| | ||||||||||| ||| ||||||
Sbjct 49374 GTCTGGAACGTCTTTGGAGAGATCGATCTCTTCGGCGGTCCAAAATGAGGCCATTGCCTT 49433
Query 34115 TTTATACATATTCCAGAT 34132
|| ||||| ||||||
Sbjct 49434 CTTGTACATGCGCCAGAT 49451
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629804373830400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |