Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148295.1_202016-10-31] 1,680 sequences; 40,142,277 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1169 147 3e-30 seq268 109 8e-19 seq196 86.0 9e-12 >seq1169 Length=73998 Score = 147 bits (162), Expect = 3e-30 Identities = 295/434 (68%), Gaps = 19/434 (4%) Strand=Plus/Minus Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486 || || |||||||| || || ||||| |||||||| || ||||| | ||||| Sbjct 48991 CTCGTCGCATTCGCAGCTGTCGAGGGTATCTTCTTCAGCGGCGCCTTTGCATCTATCTTC 48932 Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGA 125546 ||||||||||||||||| ||||||||||| |||| | ||||| |||| ||||| Sbjct 48931 TGGCTCAAGAAGCGCGGTCTCATGCCCGGCTTGACCTTCTCCAACGAACTTATCTCTCGC 48872 Query 125547 GACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACTATCTGCGTCCCGA 125605 |||||||| | ||| ||||||||| || || || || || || | | || Sbjct 48871 GACGAGGGAATGCACACCGACTTTGCCTGCCTCCTCTTCTCACAGCT-----CAACAAGA 48817 Query 125606 GTGCAGATCCAGCGA-TGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAAC 125664 | || || |||| ||| | ||| | ||||| || || || || | Sbjct 48816 ------AGCCTTCGCCTGAAGCCGTCCGCGCCATCATCACCGAGGCAGTACAAATTGAGC 48763 Query 125665 AAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGT 125724 | || || | | |||| | ||||| ||| || | |||||||||| | || |||| Sbjct 48762 AGGAATTCTTGAGCGAAGCATTACCGTGCAGATTGCTCGGCATGAACTCTACCCTCATGT 48703 Query 125725 GCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCG---CAAGA 125781 || ||||||| |||||||| || |||||||| || | | | |||| |||| Sbjct 48702 GCCAGTACATCGAGTTTGTTGCTGATCGTCTCTTGCTTGCGCT---TGGCAATGTCAAGG 48646 Query 125782 TTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCA 125841 ||||||||||| || ||||| || |||||| | |||||| || | || ||||| | Sbjct 48645 TTTACAACGCCGTCAACCCCTTCGACTTCATGGAGAACATATCTCTTGCCGGAAAGACTA 48586 Query 125842 ACTTTTTCGAGAAG 125855 |||||||||||||| Sbjct 48585 ACTTTTTCGAGAAG 48572 >seq268 Length=96356 Score = 109 bits (120), Expect = 8e-19 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 70062 AAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATG 70121 |||| || || || || || || ||||| ||||| ||| | || | || || |||||| Sbjct 73352 AAGAAGGTGACCTTGGACCGGTCTACGGGTTCCAATGGCGACATTTTGGAGCCGAGTATG 73411 Query 70122 TAGACTGCGAG-ACAGACTATTCGGGTCAGGGTGTTGATCAATTG-CAGACAATCATTGA 70179 | || ||| || ||||| ||| | ||||| || || |||||| || |||||| |||| || Sbjct 73412 TGGA-TGCAAGGACAGATTATACCGGTCAAGGCGTGGATCAACTGGCAGACA-TCATGGA 73469 Query 70180 CACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGA 70239 || || |||| ||| || ||| | | ||| | || | |||||||||||||||| Sbjct 73470 CAAACTGAAGAACAAGCCTTACGATCGCCGAATCATCTTGAGTGCATGGAATCCTGCAGA 73529 Query 70240 TTTGCACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTAC 70288 ||| ||||||| || || || || ||| ||||| |||||||| ||| Sbjct 73530 CTTGACGAAAATGGCCCTCCCCCCTTGCCACATGTTT-GCTCAGTTCTAC 73578 >seq196 Length=40614 Score = 86.0 bits (94), Expect = 9e-12 Identities = 208/315 (66%), Gaps = 0/315 (0%) Strand=Plus/Plus Query 96806 AACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACG 96865 ||||||||||| | | || || || || |||||| | | | | || | | || Sbjct 19342 AACAAACGGCACATCGAACGGTCTTGTTCCTATGCTCCGTGTCTTTGACGCGACTGCTCG 19401 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 |||||| || || ||||| || || || || || | ||| ||||| | || || || Sbjct 19402 CTACGTTGATCAAGGTGGCAACAAGCGTCCTGGTGCATTCGCCATCTACCTCGAGCCATG 19461 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985 |||||| || || || ||| | || || | || ||| ||| ||||| || || Sbjct 19462 GCACGCCGATGTCTTCAACTGGTTAGATCTGAGAAAGAACCACGGCAAAGAAGAAGCGCG 19521 Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGA 97045 || | || | || ||||| | ||| | || || ||||||||||||||||| | | Sbjct 19522 TGCTCGTGATCTTTTCTATGCCTTGTGGATTCCCGACCTGTTCATGAAGCGCGTCGAACA 19581 Query 97046 CGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGG 97105 |||| |||||| || |||||||| || || || ||||| ||||| || || Sbjct 19582 GAATGGCGACTGGACTCTCATGTGCCCTCACGAGTGCCCTGGTCTTGCCGATATCTACGG 19641 Query 97106 CGAAGAGTTTGAGGC 97120 || ||||| || || Sbjct 19642 TGACGAGTTCGAAGC 19656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741043637756800