Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148295.1_202016-10-31] 1,680 sequences; 40,142,277 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1169 132 5e-26 seq1579 118 1e-21 seq196 105 6e-18 seq537 98.7 9e-16 >seq1169 Length=73998 Score = 132 bits (146), Expect = 5e-26 Identities = 346/513 (67%), Gaps = 11/513 (2%) Strand=Plus/Minus Query 46087 CCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACT 46146 || ||| | |||||||| |||||||||| |||||||||| | || | | || Sbjct 49063 CCCTGCATCCGCAAGAAGGCCGACTGGGCACTGAAGTGGATTTGCGATGACAACTCTACC 49004 Query 46147 TTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTT 46206 || || |||| | || || || || ||| ||||| |||| || ||| ||| Sbjct 49003 TTTGCATCGCGTCTCGTCGCATTCGCAGCTGTCGAGGGTATCTTCTTCAGCGGCGCCTTT 48944 Query 46207 GCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGA 46265 || | ||||| | |||| || | || | ||||||||||| |||| || |||||| Sbjct 48943 GCATCTATCTTCTGGCTCAAGAAGCGCGGTC-TCATGCCCGGCTTGACCTTCTCCAACGA 48885 Query 46266 GCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCG 46325 || || || ||||||||||| |||| || |||||||| || ||| || | ||| | Sbjct 48884 ACTTATCTCTCGCGACGAGGGAATGCACACCGACTTTGCCTGCCTCCTCT-TCTCAC-AG 48827 Query 46326 CGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGGTGGCCAT 46385 | | || | |||| | |||| || |||| | ||| ||| ||||| || || Sbjct 48826 C-TCAACAAGAAGCCTTCGCCTGAAGCCGTCCGCGCCATCATCACCGAGGCAGTACAAAT 48768 Query 46386 TGAGAAGGAGTTTTTTACGGCCGCACTGCC-CGCTGCCCTGCTGGGCATGAACGC-ACAG 46443 |||| |||| || || | | ||| | || || | |||| ||||||||| | || Sbjct 48767 TGAGCAGGAATTCTTGAGCGAAGCATTACCGTGCAG-ATTGCTCGGCATGAACTCTACCC 48709 Query 46444 TCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCT-CGTGCAGCTTCACCAGCC 46502 || |||||| | |||||||||||||| || || || || | | ||| |||| | | Sbjct 48708 TC-ATGTGCCAGTACATCGAGTTTGTTGCTGATCGTCTCTTGCTTGC-GCTTGGCAATGT 48651 Query 46503 GAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAA 46562 ||| || |||| ||| || || || || ||| | ||||| || || | || || Sbjct 48650 CAAGGTTTACAACGCCGTCAACCCCTTCGACTTCATGGAGAACATATCTCTTGCCGGAAA 48591 Query 46563 AACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 ||||| |||||||| ||||||||||| || || Sbjct 48590 GACTAACTTTTTCGAGAAGCGCGTCGGTGATTA 48558 >seq1579 Length=49950 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | ||| ||||| || || | |||||||||||| || |||||||| ||||| Sbjct 29011 GCCGCCACGAAGACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGCT 29070 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || || || | |||||| || ||| |||| | ||||||||||| ||||| Sbjct 29071 CAGCGTACGTCCATCTTCCAACTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGG 29130 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| ||| ||||| | || | || || | ||| || | Sbjct 29131 AATACCTTCCTTGTCCTGGATCTTCGTCTTGACGTTGTCGATGGTGTCAGAGGATTCAAC 29190 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || || ||||| || || || ||||| || ||||| Sbjct 29191 TTCTAGTGTAATAGTCTTGCCGGTGAGGGTCTTCACGAAGATTTGCAT 29238 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| || || || || | || || ||||| || |||||||| ||| | Sbjct 29240 CCACCGCGGAGACGTAGAACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAC 29299 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || || |||||||| ||| |||| || ||||||||||| || ||| Sbjct 29300 AAGGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGTGGG 29359 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || || | ||||| | Sbjct 29360 ATACCCTCCTTGTCCTGGATCTTGGTCTTGACATTGTCGATGGTGTCTGATGACTCAACC 29419 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || | ||| || ||||| || ||||| Sbjct 29420 TCCAAGGTGATGGTCTTGCCCGTCAAAGTCTTGACGAAGATTTGCAT 29466 Score = 89.7 bits (98), Expect = 5e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || |||||||| || |||||||| ||| | ||| || ||||| ||||||||||| Sbjct 29498 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCG 29557 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 ||| |||| || ||||||||||| || |||||||| || ||||| Sbjct 29558 GCGAAGATCAAGCGCTGCTGGTCTGGTGGGATTCCCTCCTTGTC 29601 >seq196 Length=40614 Score = 105 bits (116), Expect = 6e-18 Identities = 159/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 |||||||| || || || || || | ||||||||| | || | || |||||| | || Sbjct 20514 TTGACGACTTGGAATTCCCCAGCAAGCACACGACGAGAGTAGATATTTGACGTGTATGGC 20455 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || ||||||| || || ||||||| || | || || ||||| || || Sbjct 20454 TCGAAGCACTCGTTGAAACCGAGAATTTGAGATGTGGAAGCAGTTGGCATAGGAGCAACA 20395 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | | ||| ||||| | |||||||||||||| || |||| |||| |||| ||||| Sbjct 20394 AGAAGTGAGTTGCGAATACCGTGCTTCTTGATATCAGCCTTGAGCGAGTCCCAGTCCCAG 20335 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCT 145283 || || || | |||| ||||||||||||||| | ||| |||| Sbjct 20334 AGATCCGTAGGAGTGACGTTCCACATGTCGTACTGGAGAATACCCT 20289 >seq537 Length=52655 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | || | |||||||||||| || |||||||| || Sbjct 29332 CCACCACGGAGTCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAT 29391 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||||||||| ||| |||| || ||||||||||| || ||| Sbjct 29392 AGGGTGCGTCCATCTTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGG 29451 Query 131128 ATTCCTTCTTTGTC 131141 |||||||| ||||| Sbjct 29452 ATTCCTTCCTTGTC 29465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472002887731200