Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148295.1_202016-10-31] 1,680 sequences; 40,142,277 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq196 123 3e-23 seq1169 87.8 2e-12 >seq196 Length=40614 Score = 123 bits (136), Expect = 3e-23 Identities = 597/937 (64%), Gaps = 12/937 (1%) Strand=Plus/Minus Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051 |||||||||||| || | | || | | || ||||| || || | || ||||| | | Sbjct 19654 TTCGAACTCGTCACCGTAGATATCGGCAAGACCAGGGCACTCGTGAGGGCACATGAGAGT 19595 Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 63110 ||| || || | | | || || ||||| || || || |||||||| | || ||| | Sbjct 19594 CCAGTCGCCATTCTGTTCGACGCGCTTCATGAACAGGTCGGGAATCCACA-AGGCATAGA 19536 Query 63111 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63170 | ||||| | | | ||| || || || |||||| | ||||| | | | Sbjct 19535 AAAGATCACGAGCACGCGCTTCTTCTTTGCCGTGGTTCTTTCTCAGATCTAACCAGTTGA 19476 Query 63171 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63230 | ||| | ||||| || || | ||| ||||| | | ||||| || ||||| || | Sbjct 19475 AGACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAATGCACCAGGACGCTTGTTGCCAC 19416 Query 63231 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 63290 | ||||| | ||| | ||| || | | | || | | ||| |||| || ||| || | Sbjct 19415 CTTGATCAACGTAGCGAGCAGTCGCGTCAAAGACACGGAGCATAGGAACAAGACCGTTCG 19356 Query 63291 ATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGAC 63350 |||| || || || ||| || || |||| |||| || || | || || | Sbjct 19355 ATGTGCCGTTTGTTCCTCCAATGTATGATCCAGTGGCTCGGATGCGATGTATGTTAAGGC 19296 Query 63351 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 63410 | || || || || | || || || | || || || | || || ||||| |||| Sbjct 19295 CGATACCACCAGCGGTCTTTGAAATCATAGCACAAGTCTTGAGGGTGTCGTAGATACCCT 19236 Query 63411 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 63470 | || || || ||| || ||| || || || || || | ||| | || || | Sbjct 19235 CGATGCTGTCCTCCTTCGTGTCAATGAGGAAGCAAGACGAGAGTTGCGGTTGAGGTGTGC 19176 Query 63471 CCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGA-AAGTAGATTGTAC 63529 | || || || | ||||| || ||||| || || |||| | ||| | |||| ||||| Sbjct 19175 CTGCGTTGAAAAGTGTAGGGGAGGCGTGCGTGAAGTATTTGTTAGACATGTAG-TTGTAT 19117 Query 63530 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 63589 |||| || || || || || ||| | ||||| || ||||| |||||||| | ||| Sbjct 19116 GTCTGTATGGCAGATTCAATGTCCTCTCCGTGAATGCCGACTGCCACACGCATGATCATA 19057 Query 63590 TGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 63649 || || || | ||| ||| |||| | ||||| | | ||| ||| |||| ||| Sbjct 19056 TGTTGTGGACGCTCAGCGACCTTGCCGCTTATTCGGAGTAGGTATGATCGCTCCAGAGTC 18997 Query 63650 TTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTT 63707 || || ||||| || | ||| ||||| |||| ||||| | ||| | ||||| | | Sbjct 18996 TTGAAGCCAAAGTATTGGTAATTGAAA--TCTCTGTCGTATACAATGGCAGAGTTCAACT 18939 Query 63708 TATCCTTATATTTGTTAAC-TACATCCATGGTAATACTTGAAATAATAGGAAAATGTTTC 63766 |||| || || | || | | || || || ||||| ||||| | | || Sbjct 18938 CATCCGCATGCTTCATGACGGTCTTGTAT-GTGATGTCCGAAATCATAGGGCATTTCTTG 18880 Query 63767 CCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttttt 63826 || || || |||| ||| | | | | || | || || || || | || || Sbjct 18879 TTGTTCTTTGGGTTGATATAATCGTAGAGGTCTTGGATGACAGCAGAGAACTGCTTCTTG 18820 Query 63827 GTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGT 63886 |||| ||||| ||||| |||||||| || | || || || || || || || ||||| Sbjct 18819 GTTTGCTTGTGAAGATTCGATACGGCGATACGTGCTGCAAGGATTGCGTAGTCGGGATG- 18761 Query 63887 TGTGTAGTACAAGT-GGCTGCTATTTCGGCTGCCAGA 63922 |||| | || || |||||| | || || ||| || Sbjct 18760 TGTGACGGTCATGTACGCTGCTGTCTCAGCGGCCTGA 18724 Score = 102 bits (112), Expect = 1e-16 Identities = 343/528 (65%), Gaps = 7/528 (1%) Strand=Plus/Minus Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909 ||||| || ||||| || || || | | || || || ||||||||||| || || ||| Sbjct 20853 GTGAACTGGATGGGTGCTGAAGCAGCCATGGTTCGGAGGTAGTACATTCCAGTCTTGAGA 20794 Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969 || | |||| || ||| ||||| || | ||| |||| ||| || Sbjct 20793 CCCATCTTCCAACCAGCAAAGTGCATGGAAGTAATCTTGCCCATGGTCGGCTCTTTCATG 20734 Query 61970 TGGATATTCATAGAT-TGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 62028 || || |||| || | ||| |||||| |||||||| || | || |||||||| | || Sbjct 20733 TGAATGTTCA-AGCTCTGAGATTGATCAATGAAGGCGCCACGATCCGCAGCCATGGTGAT 20675 Query 62029 AATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 62088 ||| || || |||||||||| || || |||| ||| ||||| || |||| Sbjct 20674 AATGGTACGCTGGCTGATTTCCCAAACCGTCTTGTAAAGGGCCTTGATATCATCGGGAAT 20615 Query 62089 GTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 62145 || | | ||||| || || ||||| ||||| || || | |||||| || | || Sbjct 20614 ATTAGGAATGTTCTGGATAGAACCACCCTCTGCAATGATACGATTCTTCATGTTGTCCGA 20555 Query 62146 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 62205 ||| | ||||| | | || | || || || || || ||||| ||||| || Sbjct 20554 CCAAAGACCCATCTCGACGAGATCTTTGAGCAGCCATGGGTTGACGACTTGGAATTCCCC 20495 Query 62206 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 62265 || | || | |||| ||| ||||| || || || || | |||| || || Sbjct 20494 AGCAAGCACACGACGAGAGTAGATATTTGACGTGTATGGCTCGAAGCACTCGTTGAAACC 20435 Query 62266 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA-TTTCTAAGAC 62324 | |||||||| || || ||||| |||||||| | || ||| || | || | || || Sbjct 20434 GAGAATTTGAGATGTGGAAGCAGTTGGCATAGGAG-CAACAAGAAGTGAGTTGCGAATAC 20376 Query 62325 CGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCG 62372 ||| | |||| | | | || || | ||||| | ||| ||||||| Sbjct 20375 CGTGCTTCTTGATATCAGCCTTGAGCGAGTCCCAGTCCCAGAGATCCG 20328 >seq1169 Length=73998 Score = 87.8 bits (96), Expect = 2e-12 Identities = 175/258 (68%), Gaps = 5/258 (2%) Strand=Plus/Plus Query 32958 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATC 33017 || ||||| |||||||| ||||| |||||||| ||||| ||||||| || || | || | Sbjct 49195 TCGGAATGGATGTTTTCCATGGCGATTTGAAAACCGTAAAAGCATCGGGCTTCTGGAACC 49254 Query 33018 TGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33077 || ||||| | | ||| ||||| | || || || || || || || ||||| Sbjct 49255 TGAACTTCGTTGCTAAAACGTTCGAGGAGGTTCTCGTTGACGATGCCATCCGATGCTGCG 49314 Query 33078 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA----GTTTATTCCA 33133 ||||| || | | ||| || ||| | |||||| | ||| | || ||||| Sbjct 49315 AAAAATGCGAGAATGTGTGAGATGAAAAAGCGTTCGTC-GTCGTTCAGGCGGTTGTTCCA 49373 Query 33134 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33193 || | ||||| || | ||| | ||||| | ||||||||||| ||| |||||| Sbjct 49374 GTCTGGAACGTCTTTGGAGAGATCGATCTCTTCGGCGGTCCAAAATGAGGCCATTGCCTT 49433 Query 33194 TTTATACATATTCCAGAT 33211 || ||||| |||||| Sbjct 49434 CTTGTACATGCGCCAGAT 49451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633618693728000