Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148295.1_202016-10-31] 1,680 sequences; 40,142,277 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1579 125 6e-24 seq1455 91.5 1e-13 >seq1579 Length=49950 Score = 125 bits (138), Expect = 6e-24 Identities = 158/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||||||||| || || ||||||| | || || ||||| || Sbjct 29466 ATGCAAATCTTCGTCAAGACTTTGACGGGCAAGACCATCACCTTGGAGGTTGAGTCATCA 29407 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| ||||| || || ||| || ||| ||||| || || || ||||| |||| Sbjct 29406 GACACCATCGA--CAATGTCAAGACCAAGATCCAGGACAAGGAGGGTATCCCACCAGACC 29349 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | || || |||||||| ||| | ||||||| ||||| || ||| |||| Sbjct 29348 AGCAGCGCTTGATCTTCGCCGGCAAGCAACTCGAAGATGGCCGCACCTTGTCCGACTACA 29289 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 | || || || |||||||| || || || || ||| Sbjct 29288 ACATCCAGAAGGAATCCACTCTCCACTTGGTTCTA 29254 >seq1455 Length=38904 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/156 (74%), Gaps = 4/156 (3%) Strand=Plus/Minus Query 25033 CCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTG--AAGCAAAAAATCAC 25090 ||||||| | || || ||||| |||||||||||||| || || ||| || ||| Sbjct 28686 CCATCACCCTTGAGGTCGAGTCCTCTGACACTATCGA--CAATGTCAAGACCAAGATCCA 28629 Query 25091 TGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGA 25150 ||||| || || ||||| || ||||||||||| | || ||||| || || ||||| || Sbjct 28628 AGACAAGGAGGGAATTCCGCCAGACCAACAGCGATTAATCTTTGCTGGAAAGCAATTGGA 28569 Query 25151 AGATGATCGCACTGTGGGCGATTACAATATTCAAAA 25186 |||| || || || |||| ||||| || ||||| Sbjct 28568 GGATGGACGTACCTTGAGCGACTACAACATCCAAAA 28533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433319127609200