Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148295.1_202016-10-31] 1,680 sequences; 40,142,277 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq196 118 1e-21 seq1169 105 8e-18 seq1445 89.7 6e-13 seq1337 82.4 9e-11 seq249 82.4 9e-11 >seq196 Length=40614 Score = 118 bits (130), Expect = 1e-21 Identities = 404/627 (64%), Gaps = 11/627 (2%) Strand=Plus/Minus Query 114698 TACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTA 114757 ||||| |||||| ||||| ||||| ||||| | || | || || || || Sbjct 19671 TACTTCTCGTAGAGAGCTTCGAACTCGTCACCGTAGATATCGGCAAGACCAGGGCACTCG 19612 Query 114758 TCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGG 114817 | ||||| | ||||| ||| | ||| || || || ||||||||||| ||||| || Sbjct 19611 TGAGGGCACATGAGAGTCCAGTCGCCATTCTGTTCGACGCGCTTCATGAACAGGTCGGGA 19552 Query 114818 ATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGC 114877 ||||| | || |||| ||||| ||| || |||||||| | || || || | | Sbjct 19551 ATCCACAAGGCATAGAAAAGATCACGAGCACGCGCTTCTTCTTTGCCGTGGTTCTTTCTC 19492 Query 114878 AACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCC 114937 | || || ||| | || ||| |||||||| || || ||||| | |||| || || Sbjct 19491 AGATCTAACCAGTTGAAGACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAATGCACC- 19433 Query 114938 TTACGACG------ACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGC 114991 | |||| ||| | || | || || | || || || | ||| || || ||| Sbjct 19432 --AGGACGCTTGTTGCCACCTTGATCAACGTAGCGAGCAGTCGCGTCAAAGACACGGAGC 19375 Query 114992 ATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTG 115051 || |||| | ||| | ||| ||| ||||| || | ||| || | |||||| | Sbjct 19374 ATAGGAACAAGACCGTTCGATGTGCCGTTTGTTCCTCCAATGTATGATCCAGTGGCTCGG 19315 Query 115052 ACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTG 115111 | ||| |||| | || ||||| || || |||||| || || || | || Sbjct 19314 ATGCGATGTATGTTAAGGCCGATACCACCAGCGGTCTTTGAAATCATAGCACAAGTCTTG 19255 Query 115112 AGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGAC 115171 || || ||||||| || ||||| ||| |||| | | || |||||||| ||| Sbjct 19254 AGGGTGTCGTAGATACCCTCGATGCTGTCCTCCTTCGTGTCAATGAGGAAGCAAGACGAG 19195 Query 115172 ATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT 115231 | ||| || ||||| || |||||||| || || || | ||||| |||| || | Sbjct 19194 AGTTGCGGTTGAGGTGTGCCTGCGTTGAAAAGTGTAGGGGAGGCGTGCGTGAA-GTATTT 19136 Query 115232 -TGGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGAT 115290 | ||||| | | ||| |||| | | | | |||||| || |||||||| |||| Sbjct 19135 GTTAGACATGTAGTTGTATGTCTGTATGGCAGATTCAATGTCCTCTCCGTGAATGCCGAC 19076 Query 115291 CGAGACCCGCATAAACATGTATTGGGG 115317 | || ||||| | ||| | ||| || Sbjct 19075 TGCCACACGCATGATCATATGTTGTGG 19049 Score = 93.3 bits (102), Expect = 5e-14 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 114510 CAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTT 114569 ||| |||||| || || || || |||| ||| || || |||||| ||||||||||| | Sbjct 19907 CAGAGTACTCAATGATCTCAGTGCACAGATTGGAGCTGCGAATGGTTCCCAAGTTCTTCT 19848 Query 114570 GATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTT 114629 |||| ||| ||| || ||||| |||||||||||| | || | || ||||| || | Sbjct 19847 GATTGCTCTTGCGGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTGCCAGTCTCGGTCT 19788 Query 114630 GGGACTTG-AGAATAGCCTTCCAGA 114653 ||| |||| ||||| || | ||||| Sbjct 19787 GGG-CTTGAAGAATGGCGTACCAGA 19764 >seq1169 Length=73998 Score = 105 bits (116), Expect = 8e-18 Identities = 343/518 (66%), Gaps = 16/518 (3%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCA-AGCTGATATTCTCCA 125816 ||| || || || ||||||||||| ||||| ||||| ||| | | || | || ||||||| Sbjct 48557 GTAATCACCGACGCGCTTCTCGAAAAAGTTAGTCTTTCCGGCAAGAGAT-ATGTTCTCCA 48615 Query 125817 TAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACC-CCAATCTGTTTGAGGAGA 125875 | || || || ||||| | ||| ||| ||| || |||| | | |||| Sbjct 48616 TGAAGTCGAAGGGGTTGACGGCGTTGTAAACC-TTGACATTGCCAAGCGCAAGCAAGAGA 48674 Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 125935 ||||| | || |||| ||||||| |||| ||||||||| |||| | | Sbjct 48675 CGATCAGCAACAAACTCGATGTACTGGCACATGAGGGTAGAGTTCATGCCGAGCAATCTG 48734 Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995 || || | || || | ||| ||| |||||||| || || || | ||||||| Sbjct 48735 CACGGTAATGCTTCGCTCAAGAATTCCTGCTCAATTTGTACTGCCTCGGTGATGATGGCG 48794 Query 125996 TGAATGGTGTCCACCCCAGG--TCTA-TTGCGCAAAGTCTTGAAGAGTTCCACGGCAAAC 126052 | | || || | ||| ||| ||| || | || ||| || |||||| Sbjct 48795 CGGACGGCTTCAGGCGAAGGCTTCTTGTTGAGCTGTGAGAAGAGGAGG--CA-GGCAAAG 48851 Query 126053 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATG 126112 || ||| | |||||||| || ||||| ||||| || |||||| || || |||||| Sbjct 48852 TCGGTGTGCATTCCCTCGTCGCGAGAGATAAGTTCGTTGGAGAAGGTCAAGCCGGGCATG 48911 Query 126113 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCC 126172 ||||| |||||||| | |||||| || | ||| | || ||||||||| ||||| Sbjct 48912 AGACCGCGCTTCTTGAGCCAGAAGATAGATGCAAAGGCGCCGCTGAAGAAGATACCCTCG 48971 Query 126173 ACACACGCGAACGCAAAGAGACGCTCAGCAAAGG-AGCG-CGACTTTGTGTCAAA-CCAC 126229 ||| ||||| || | ||||||| ||||||| || | | | | | |||| |||| Sbjct 48972 ACAGCTGCGAATGCGACGAGACGCGATGCAAAGGTAGAGTTGTCATCG---CAAATCCAC 49028 Query 126230 TTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGAC 126267 |||| ||||| | ||||| || ||| || ||||| Sbjct 49029 TTCAGTGCCCAGTCGGCCTTCTTGCGGATGCAGGGGAC 49066 >seq1445 Length=10879 Score = 89.7 bits (98), Expect = 6e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 160776 CAGACTACACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGGCACACAGATTTCCAAA 160835 ||||||||| ||| ||||| ||| || | |||||||| | | |||| |||||| | Sbjct 1180 CAGACTACAGAGGCGAAGTAAAAATCATCCTCTTCAACTTCAGCGACACCGATTTCGCCA 1239 Query 160836 TCAAAAGGGGGGATCGCATCGCGCAACTCATCTTAGAGAGGTGCGAGACGCCCCAAGTTG 160895 ||||| ||||| |||||||||||| | ||| | |||||| | |||||| | |||| Sbjct 1240 TCAAAGAAGGGGACCGCATCGCGCAATTGATCGTTGAGAGGATATACACGCCCGATGTTG 1299 Query 160896 AAGAAATTGGCGCGGTTGAGGAGACCGAGAGAGGTTCGGGTGGATTTGG 160944 | ||| || | | |||| | | ||||||| | ||||| ||||| Sbjct 1300 TCGTGGTTGACGAGTTGGAGGCAAGTGTGAGAGGTGCCGGTGGGTTTGG 1348 >seq1337 Length=120122 Score = 82.4 bits (90), Expect = 9e-11 Identities = 163/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 10958 TTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGT-TGATTTTCACGGGCAAC 11016 || || | |||||| |||||||| ||||||| ||| || ||| || | ||| | || Sbjct 109291 TTCCCAATGGCGTCGATTTCATCAATGAAAATGATGCAAGGTGTGTTCTTC-CTCGCGGT 109349 Query 11017 TTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGC 11076 | || | |||||| || | | |||||||||||||||||| ||||| || | | Sbjct 109350 GGCGAACAGATCTCGAACACGAGATGGACCGACACCCACAAACATCTCCACGAACTCAGA 109409 Query 11077 GGCG-GAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGG 11135 | || ||| | || ||| || || ||||| || || | ||| |||||| || | Sbjct 109410 GCCGCTCACACT-GAAGAATGGAACACCAGATTCGCCAGCTGTTGCTTTGGCGAGCAGCG 109468 Query 11136 TCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCA 11191 |||| || || ||||| ||| | |||| |||||| || || ||| | |||||| Sbjct 109469 TCTTGCCAGTTCCAGGAGGCCCAGAAAGAATGGCACCGCGAGGAATCTTCGCACCA 109524 >seq249 Length=124404 Score = 82.4 bits (90), Expect = 9e-11 Identities = 163/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 10958 TTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGT-TGATTTTCACGGGCAAC 11016 || || | |||||| |||||||| ||||||| ||| || ||| || | ||| | || Sbjct 10340 TTCCCAATGGCGTCGATTTCATCAATGAAAATGATGCAAGGTGTGTTCTTC-CTCGCGGT 10282 Query 11017 TTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGC 11076 | || | |||||| || | | |||||||||||||||||| ||||| || | | Sbjct 10281 GGCGAACAGATCTCGAACACGAGATGGACCGACACCCACAAACATCTCCACGAACTCAGA 10222 Query 11077 GGCG-GAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGG 11135 | || ||| | || ||| || || ||||| || || | ||| |||||| || | Sbjct 10221 GCCGCTCACACT-GAAGAATGGAACACCAGATTCGCCAGCTGTTGCTTTGGCGAGCAGCG 10163 Query 11136 TCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCA 11191 |||| || || ||||| ||| | |||| |||||| || || ||| | |||||| Sbjct 10162 TCTTGCCAGTTCCAGGAGGCCCAGAAAGAATGGCACCGCGAGGAATCTTCGCACCA 10107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597341055574400