Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148295.1_202016-10-31] 1,680 sequences; 40,142,277 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1169 102 1e-16 seq1337 87.8 2e-12 seq249 87.8 2e-12 >seq1169 Length=73998 Score = 102 bits (112), Expect = 1e-16 Identities = 160/226 (71%), Gaps = 10/226 (4%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| | |||||||| || ||||| ||||| || |||||| || || Sbjct 48846 GCAAAGTCGGTGTGCATTCCCTCGTCGCGAGAGATAAGTTCGTTGGAGAAGGTCAAGCCG 48905 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||||||||| |||||||| | |||||| || | ||| | ||| ||||||||| Sbjct 48906 GGCATGAGACCGCGCTTCTTGAGCCAGAAGATAGATGCAAAGGCGCCGCTGAAGAAGATA 48965 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGG-AGCGGGACTTTGT-ATC-- 127695 ||||| ||| ||||| || | |||||| ||||||| || | |||| ||| Sbjct 48966 CCCTCGACAGCTGCGAATGCGACGAGACGCGATGCAAAGGTAGAG-----TTGTCATCGC 49020 Query 127696 -AAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGAC 127740 || |||||||| ||||| | ||||| || ||| || ||||| Sbjct 49021 AAATCCACTTCAGTGCCCAGTCGGCCTTCTTGCGGATGCAGGGGAC 49066 >seq1337 Length=120122 Score = 87.8 bits (96), Expect = 2e-12 Identities = 273/412 (66%), Gaps = 17/412 (4%) Strand=Plus/Plus Query 12705 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 12764 || || || || || || || | ||| | ||| | ||||| | |||||| |||| Sbjct 109120 TCGAATCGTCCAGGCCGTAGCAAGGCCTTGTCCAATATATCGGGTCTGTTCGTACCCGCA 109179 Query 12765 ATGACAACGATGCCCGTCTCGT--TATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGA 12822 || || || | || || ||| | | ||| |||||||| ||||||| || || |||| Sbjct 109180 ATAACCACAA--CCTGTTCCGTGGTGTTGAAACCATCCATTTCAGTCAGGATCTGGTTGA 109237 Query 12823 TGGTTTGTTCACGTTCATCATT--CGCGGGCATACCACC----CGCACTGCGTTGCTTAC 12876 || ||| ||||||||||| | | | || | || || || | || | Sbjct 109238 GCGTGCTTTCCCGTTCATCATTTCCACCGCCAAAGTTGTTTTTCGATCT-CGAT--TTCC 109294 Query 12877 CGACGGCGTCAATTTCGTCAATGAAAACGATACACGGT-TGATTTTCACGGGCAACTTCA 12935 | | |||||| ||||| |||||||||| ||| || ||| || | ||| | || | Sbjct 109295 CAATGGCGTCGATTTCATCAATGAAAATGATGCAAGGTGTGTTCTTC-CTCGCGGTGGCG 109353 Query 12936 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG 12995 || | |||||| || | | |||||||||||||||||||||||| || | | | || Sbjct 109354 AACAGATCTCGAACACGAGATGGACCGACACCCACAAACATCTCCACGAACTCAGAGCCG 109413 Query 12996 -GAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 13054 ||| | || ||| || || ||||| || || | ||| |||||| || ||||| Sbjct 109414 CTCACACT-GAAGAATGGAACACCAGATTCGCCAGCTGTTGCTTTGGCGAGCAGCGTCTT 109472 Query 13055 CCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACCA 13106 || || || || ||| | |||| |||||| || || ||| | |||||| Sbjct 109473 GCCAGTTCCAGGAGGCCCAGAAAGAATGGCACCGCGAGGAATCTTCGCACCA 109524 >seq249 Length=124404 Score = 87.8 bits (96), Expect = 2e-12 Identities = 273/412 (66%), Gaps = 17/412 (4%) Strand=Plus/Minus Query 12705 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 12764 || || || || || || || | ||| | ||| | ||||| | |||||| |||| Sbjct 10511 TCGAATCGTCCAGGCCGTAGCAAGGCCTTGTCCAATATATCGGGTCTGTTCGTACCCGCA 10452 Query 12765 ATGACAACGATGCCCGTCTCGT--TATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGA 12822 || || || | || || ||| | | ||| |||||||| ||||||| || || |||| Sbjct 10451 ATAACCACAA--CCTGTTCCGTGGTGTTGAAACCATCCATTTCAGTCAGGATCTGGTTGA 10394 Query 12823 TGGTTTGTTCACGTTCATCATT--CGCGGGCATACCACC----CGCACTGCGTTGCTTAC 12876 || ||| ||||||||||| | | | || | || || || | || | Sbjct 10393 GCGTGCTTTCCCGTTCATCATTTCCACCGCCAAAGTTGTTTTTCGATCT-CGAT--TTCC 10337 Query 12877 CGACGGCGTCAATTTCGTCAATGAAAACGATACACGGT-TGATTTTCACGGGCAACTTCA 12935 | | |||||| ||||| |||||||||| ||| || ||| || | ||| | || | Sbjct 10336 CAATGGCGTCGATTTCATCAATGAAAATGATGCAAGGTGTGTTCTTC-CTCGCGGTGGCG 10278 Query 12936 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG 12995 || | |||||| || | | |||||||||||||||||||||||| || | | | || Sbjct 10277 AACAGATCTCGAACACGAGATGGACCGACACCCACAAACATCTCCACGAACTCAGAGCCG 10218 Query 12996 -GAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 13054 ||| | || ||| || || ||||| || || | ||| |||||| || ||||| Sbjct 10217 CTCACACT-GAAGAATGGAACACCAGATTCGCCAGCTGTTGCTTTGGCGAGCAGCGTCTT 10159 Query 13055 CCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACCA 13106 || || || || ||| | |||| |||||| || || ||| | |||||| Sbjct 10158 GCCAGTTCCAGGAGGCCCAGAAAGAATGGCACCGCGAGGAATCTTCGCACCA 10107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613494316348800