Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148295.1_202016-10-31] 1,680 sequences; 40,142,277 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1169 149 6e-31 seq1579 122 9e-23 seq1455 109 5e-19 >seq1169 Length=73998 Score = 149 bits (164), Expect = 6e-31 Identities = 202/281 (72%), Gaps = 3/281 (1%) Strand=Plus/Plus Query 133171 GTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCG 133230 || ||||| ||| || || | || || || | ||| ||||||||||||||||| ||| Sbjct 49171 GTCTCGATCAGGAGGGAGTATGTCTCGGAATGGATGTTTTCCATGGCGATTTGAAAACCG 49230 Query 133231 TAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCG 133290 |||||||| || || || ||||| ||||| | ||||| |||| || || ||| Sbjct 49231 TAAAAGCATCGGGCTTCTGGAACCTGAACTTCGTTGCTAAAACGTTCGAGGAGGTTCTCG 49290 Query 133291 TTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCG 133350 ||||||||||| || || |||||||| || || | ||| ||||||| ||| ||| Sbjct 49291 TTGACGATGCCATCCGATGCTGCGAAAAATGCGAGAATGTGTGAGATGAAAAAGCGTTCG 49350 Query 133351 TTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACG 133407 | |||||||| ||| | |||||| | ||| ||||| || || | ||| ||| || Sbjct 49351 TCGTCGTTCAGGCGGTTGTTCCAGTCTGGAACGTCTTTGGAGAGATCGATCTCTTCGGCG 49410 Query 133408 GTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACAT 133448 |||||||| || ||| || || |||||||| | ||| || Sbjct 49411 GTCCAAAATGAGGCCATTGCCTTCTTGTACATGCGCCAGAT 49451 Score = 107 bits (118), Expect = 2e-18 Identities = 116/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 ||| ||||||||| |||| |||||||| | || || ||||||||| ||| ||||| Sbjct 48842 GCAGGCAAAGTCGGTGTGCATTCCCTCGTCGCGAGAGATAAGTTCGTTGGAGAAGGTCAA 48901 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 |||||||||||| ||||| || |||||||| || || | || || ||| ||||| Sbjct 48902 GCCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATAGATGCAAAGGCGCCGCTGAAGAA 48961 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGC 133047 || |||||||| || ||||| || || || ||| Sbjct 48962 GATACCCTCGACAGCTGCGAATGCGACGAGACGC 48995 >seq1579 Length=49950 Score = 122 bits (134), Expect = 9e-23 Identities = 167/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| ||||| || || || | || || || || | Sbjct 29238 ATGCAAATCTTCGTGAAGACCCTCACCGGCAAGACTATTACACTAGAAGTTGAATCCTCT 29179 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | |||| | |||| || |||| ||||| || || ||||| | |||| Sbjct 29178 GACACCATCGACAACG--TCAAGACGAAGATCCAGGACAAGGAAGGTATTCCTCCAGACC 29121 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| ||||| | ||| || || ||| |||| || | || || || | |||||||| Sbjct 29120 AGCAGCGCCTCATCTTCGCCGGAAAGCAGTTGGAAGATGGACGTACGCTGAGCGACTACA 29061 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| ||||| |||| |||| |||||||| ||| | | |||||| Sbjct 29060 ACATCCAGAAGGAGTCGACCTTGCACTTGGTGCTCCGTCTTCGTGGCGGC 29011 Score = 109 bits (120), Expect = 5e-19 Identities = 157/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | |||||||| ||||||||| | || || ||| | | Sbjct 29466 ATGCAAATCTTCGTCAAGACTTTGACGGGCAAGACCATCACCTTGGAGGTTGAGTCATCA 29407 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | || | | |||| || |||| ||||| ||||| || || | |||| Sbjct 29406 GACACCATCGACAATG--TCAAGACCAAGATCCAGGACAAGGAGGGTATCCCACCAGACC 29349 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| | || | ||| ||||| || || || || | |||||| | |||||||| Sbjct 29348 AGCAGCGCTTGATCTTCGCCGGCAAGCAACTCGAAGATGGCCGCACCTTGTCCGACTACA 29289 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||| |||||| | || || || ||||| || ||| Sbjct 29288 ACATCCAGAAGGAATCCACTCTCCACTTGGTTCTACGT 29251 Score = 84.2 bits (92), Expect = 2e-11 Identities = 122/169 (72%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 || || || || |||||| | || || ||| | | ||||| | | | |||| | |||| Sbjct 29670 ACAGGAAAGACGATCACCCTTGAGGTTGAGTCTAGCGACACCATCGACAACG--TCAAGA 29613 Query 38327 AAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385 || || | ||||| |||||||| || | ||||| ||||| | || | ||| |||| Sbjct 29612 CCAAGATTCAAGACAAGGAGGGAATCCCACCAGACCAGCAGCGCTTGATCTTCGCCGGCA 29553 Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434 | ||||| || || | || |||||| ||||||||||||||| ||||| Sbjct 29552 AGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAGGA 29504 >seq1455 Length=38904 Score = 109 bits (120), Expect = 5e-19 Identities = 136/183 (74%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| ||||| ||||||||||| ||||||||| | || |||||| || | |||| | Sbjct 28711 TTCGTCAAAACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCTGACACTATC 28652 Query 38313 CA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGC 38370 | || | | |||| || |||| ||||| ||||||||||| | ||||||||||| Sbjct 28651 GACAATG--TCAAGACCAAGATCCAAGACAAGGAGGGAATTCCGCCAGACCAACAGCGAT 28594 Query 38371 TCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAA 38430 | || | || || || || |||| || | || ||| | | ||||||||||||||||| Sbjct 28593 TAATCTTTGCTGGAAAGCAATTGGAGGATGGACGTACCTTGAGCGACTACAACATCCAAA 28534 Query 38431 AGG 38433 ||| Sbjct 28533 AGG 28531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500162296371200