Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148295.1_202016-10-31] 1,680 sequences; 40,142,277 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq836 253 3e-62 seq1410 114 2e-20 seq409 105 8e-18 seq196 105 8e-18 >seq836 Length=28874 Score = 253 bits (280), Expect = 3e-62 Identities = 479/699 (69%), Gaps = 12/699 (2%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| |||||||| |||||||| || || || || || | ||||| || || ||||| Sbjct 23619 TCGAAGTCTTCACCTCCCAAGTGGGTGTCACCAGCAGTGGACTTGACCTCGAAAATACCC 23560 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | |||||| | || | || ||||| || || || ||||| || || || || || ||| Sbjct 23559 TCCTCAATGGTCAAAAGAGACACATCGAAGGTTCCTCCACCGAGATCGAAGATAAGGACG 23500 Query 7577 TTCGTATCGTCGTCTTTG---TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 || | || | || ||||| || ||||| || ||||| || || || || ||| Sbjct 23499 TT---ACGCTCACCAGTGGCCTTCTTGTCAAGACCATAAGCGATGGCAGCGGCTGTGGGT 23443 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 || || || ||||| || ||| ||||||||||| | || || || || |||||| Sbjct 23442 TCGTTGATGATACGGAGGACGTTGAGGCCAGCAATGAGACCAGCGTCCTTTGTAGCTTGT 23383 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753 || ||||| ||||| ||||| || ||||| || ||||| |||| |||| | ||| Sbjct 23382 CGCTGCGAGTCGTTGAAGTATGCTGGGACTGTGACGACAGCGTTGTTGACGGTACCTCCG 23323 Query 7754 AGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCC 7813 ||||| || || ||| | || ||| ||||| | | ||| || || ||||| || | Sbjct 23322 AGATATGACTCAGCGGTCTCGCGCATCTTGGTCAAGATCATGGAGGAGATCTCCTCTGGT 23263 Query 7814 GCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCG 7873 | || || || || || || || |||| | | | || || ||| ||| | Sbjct 23262 GTGAAAGTCTTGGTCTCGCCCTTGAACTCAATCTGGACAACAGGCTT-GCCG-AGC-TTG 23206 Query 7874 GGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTT 7933 || | ||| | | | | |||||||| | ||||||| || | |||||| Sbjct 23205 TCGACGATCTTGAAGGGGAAGTGCTTCATATCAGCCTGGACCTCAGCATCGGCAAACTTG 23146 Query 7934 CTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTC 7993 | ||||| || ||||| ||||| || | ||||| |||||||||||| |||||| Sbjct 23145 CGACCGATGAGGCGCTTGGCATCGAAGATAGTGTTGACGGGGTTCATGGCGACCTGGTTC 23086 Query 7994 TTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTC 8053 ||||||| ||| || || |||||||| || || || || || ||| | ||||| || Sbjct 23085 TTCGCCGAGTCACCAATGAGACGTTCCGTA---TCTGTGAAGGCAACGAAGGATGGTGTT 23029 Query 8054 GTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACG 8113 || || || || |||||||| ||||| ||||| | ||||| | | ||| || ||| Sbjct 23028 GTGCGGTTACCCTGGTCGTTGGCAATGATTTCGATACGGTCATCTCTGAAGATACCCACG 22969 Query 8114 CACGAATACGTTGTTCCTAAATCAATACCGATTGCTTGA 8152 || || ||||| || || ||||| |||||||| ||| || Sbjct 22968 CAGGAGTACGTGGTACCCAAATCGATACCGATAGCTGGA 22930 >seq1410 Length=100654 Score = 114 bits (126), Expect = 2e-20 Identities = 242/358 (68%), Gaps = 6/358 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| |||||||||||||| || || || ||||| | || ||||||| ||| Sbjct 63931 TCGAAATCCTCACCACCCAAGTGGGTGTCACCAGCGGTGGAGAGAACCTCAAAGACACCA 63990 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTC---AAAAATGAGT 7573 || | | | | |||||||| || || |||||||||| ||| | ||||| Sbjct 63991 GAGTCGACAGTGAGCGCGGAAACATCGAAGGTTCCACCACCCAAGTCGTACACAATGA-- 64048 Query 7574 ACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 | || || || || | | ||| || |||||||| || | ||| || || ||||| Sbjct 64049 TCTGGCG-CTCCTCCTCGCTCTGCTTGTCAAGACCGTAAGCCAAAGCGGCTGCGGTTGGC 64107 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 || || | || ||| ||| ||| || || || || || | ||||| || || || Sbjct 64108 TCGTTGACAACACGGAGAACGTTAAGACCGGCGATGGTACCAGCATCCTTGGTGGCGGCA 64167 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753 ||||| ||||| |||||||| ||||| ||||| || |||| ||| || | || Sbjct 64168 CGTTGGTTGTCGTTGAAGTAGGCGGGGACGGTTACAACGGCGTTGACGACCTTTTGTCCC 64227 Query 7754 AGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAG 7811 | || || || |||| || |||||||| |||||||| | || || || |||| Sbjct 64228 AAGTAGGACTCAGCGACTTCCTTCATTTTCTGGAGAACCATAGCGGAGATTTCCTCAG 64285 >seq409 Length=51851 Score = 105 bits (116), Expect = 8e-18 Identities = 342/522 (66%), Gaps = 17/522 (3%) Strand=Plus/Plus Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303 || || || ||||| |||||||| |||| | | || || |||||||| | | || Sbjct 23958 AGGTCTTCGAAACGGGCACGGGTGATGGTGGCAGTAAAGTCCTCGCCGTCGAAGAGGGAG 24017 Query 7304 TCAATTTCAATGGTTGTT--TGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361 || || || | ||| || || | || | || || || ||||| || || || || | Sbjct 24018 TCGATCTCGACGGTGGTGGATGAGGCGCTG--GACAAAGTACGCTTGGCACGTTCGCAAG 24075 Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTT 7421 | || ||||| | ||| || ||||| | | ||| || || || ||||| || || Sbjct 24076 CGGTACGTAACCTACGGAGAGCACGGGCATCACCAGAGATGTCCTTCTTGGTCTTTCGCG 24135 Query 7422 TAAACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGT 7480 ||||| | |||||| |||| ||| | | |||||||| | ||||||||||||| Sbjct 24136 AGAACTCCTTCTTGAAGTGGTCGAGCAAGT-TGGTGTCGAAATCCTGACCACCCAAGTGT 24194 Query 7481 GTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACA 7540 || || || || || || ||||| |||| ||| || | |||| | | || ||| Sbjct 24195 GTGTCACCAGCTGTGGCCTTGACAGTGAAGACACCGCCCTGGATGTGAAGAAGGGAGACA 24254 Query 7541 TCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTT- 7599 || || || || ||||| || || | || | || || | | | ||| | ||| Sbjct 24255 TCGAAAGTTCCTCCACCGAGATCGTAGATCAACACATT--TCGCTCCTTCTCAG-ACTTA 24311 Query 7600 -----ATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATAC-GAAGACA 7653 | |||||||||| ||||| || || || || || || || || |||| || |||| Sbjct 24312 CCGGAACCGAGACCGTAGGCGATGGCAGCGGCGGTAGGCTCGTTGATGATACGGAGGACA 24371 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 || || || | || | | || || || || ||||| || || ||||| || || Sbjct 24372 -TTGAGTCCGGAGATGGAACCGGCGTCCTTGGTGGCTTGACGCTGGTTGTCGTTGAAATA 24430 Query 7714 GGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || || || || ||||| || | | || ||||| ||||| Sbjct 24431 AGCTGGAACGGTGACGACAGCCTTCTCAACCTTCTTTCCGAG 24472 >seq196 Length=40614 Score = 105 bits (116), Expect = 8e-18 Identities = 338/522 (65%), Gaps = 17/522 (3%) Strand=Plus/Minus Query 105466 TATTTCTCGTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGACCCTTTGCCTGA 105525 || |||||||| ||| |||| ||||| | |||||| | || | |||||| || Sbjct 19671 TACTTCTCGTAGAGAGCTTCGAACTCGTCACCGTAGATATCGGCAAGACCAGGGCACTCG 19612 Query 105526 TCAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATCTGGA 105585 | ||| || | | | ||| | |||| ||| ||||| |||||||||| || ||| Sbjct 19611 TGAGGGCACATGAGAGTCCAGTCGCCATTCTGTTCGACGCGCTTCATGAACAGGTCGGGA 19552 Query 105586 ATCCACATGGCTGAAAAGAGGTCTCGACACCTCGCCTCTTCATCACCTTGATTCAAACGA 105645 ||||||| ||| | || || || ||| | ||| ||||| | || || ||| | Sbjct 19551 ATCCACAAGGCATAGAAAAGATCACGAGCACGCGCTTCTTCTTTGCCGTGGTTCTTTCTC 19492 Query 105646 ATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGC-AATAGACCC 105704 | || | | | || | ||||||||||||||| || | |||| || ||| ||| Sbjct 19491 AGATCTAACCAGTTGAAGACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAATGCACC- 19433 Query 105705 TTTACGACGC------CCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGTAA 105758 | ||||| || |||||| || || | || || | || | | || || | Sbjct 19432 ---AGGACGCTTGTTGCCACCTTGATCAACGTAGCGAGCAGTCGCGTCAAAGACACGGAG 19376 Query 105759 CATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCACG 105818 ||| |||| || ||| | ||||| || |||||||| | ||| | |||| | | || || Sbjct 19375 CATAGGAACAAGACCGTTCGATGTGCCGTTTGTTCCTCCAATGTATGATCCAGTGGCTCG 19316 Query 105819 TACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTT---ACTGATACGCGCACACTC 105875 | || | || | || ||||| ||||| ||| | | ||| ||||| Sbjct 19315 GATGCGATGTATGTTAAGGCCGATACCACCAGCGGTCTTTGAAATCATA---GCACAAGT 19259 Query 105876 TTTTACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGA 105935 || | || ||||| ||||| ||||| || || ||||| | |||| ||||| || || Sbjct 19258 CTTGAGGGTGTCGTAGATACCCTCGATGCTGTCCTCCTTCGTGTCAATGAGGAAGCAAGA 19199 Query 105936 TGACATTTGTGGTCTGGGTGTACCAGCATTGAACAGAGTTGG 105977 || | ||| ||| ||||| || || ||||| || || || Sbjct 19198 CGAGAGTTGCGGTTGAGGTGTGCCTGCGTTGAAAAGTGTAGG 19157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635119462211200