Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148295.1_202016-10-31] 1,680 sequences; 40,142,277 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq196 176 6e-39 seq1169 131 2e-25 seq1337 96.9 4e-15 seq249 96.9 4e-15 >seq196 Length=40614 Score = 176 bits (194), Expect = 6e-39 Identities = 417/627 (67%), Gaps = 11/627 (2%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 ||||| | ||| ||||||| || || |||| || || || || || ||||| |||| Sbjct 19049 CCACAACATATGATCATGCGTGTGGCAGTCGGCATTCACGGAGAGGACATTGAATCTGCC 19108 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 | |||||||| || | ||||| |||| ||||| | || || || ||| Sbjct 19109 ATACAGACATACAACTACATGTCTAACAAATACTTCACGCACGCCTCCCCTACACTTTTC 19168 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||| || ||||| ||| ||| | || ||| ||||| |||| | |||||||| Sbjct 19169 AACGCAGGCACACCTCAACCGCAACTCTCGTCTTGCTTCCTCATTGACACGAAGGAGGAC 19228 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 ||| | || || |||| ||| |||| ||||| || |||||| |||||| Sbjct 19229 AGCATCGAGGGTATCTACGACACCCTCAAGACTTGTGCTATGATTTCAAAGACCGCTGGT 19288 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAAT 111911 |||||||| | |||| ||| || |||||| || ||| |||| ||||| Sbjct 19289 GGTATCGGCCTTAACATACATCGCATCCGAGCCACTGGATCATACATTGGAGGAACAAAC 19348 Query 111912 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 111971 || ||| | ||| || |||| ||||| || || ||| |||| || || ||||| || Sbjct 19349 GGCACATCGAACGGTCTTGTTCCTATGCTCCGTGTCTTTGACGCGACTGCTCGCTACGTT 19408 Query 111972 AACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 112025 | |||| ||| ||||| || | |||| |||| || |||||||||||| Sbjct 19409 GATCAAGGTGGCAACAAGCGTC---CTGGTGCATTCGCCATCTACCTCGAGCCATGGCAC 19465 Query 112026 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC 112085 || ||| || | | | | || || | ||||| || | || || |||| |||| Sbjct 19466 GCCGATGTCTTCAACTGGTTAGATCTGAGAAAGAACCACGGCAAAGAAGAAGCGC-GTGC 19524 Query 112086 -CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 112144 || ||||| |||| || | |||||||| || || ||||||||| | || || ||| Sbjct 19525 TCGTGATCTTTTCTATGCCTTGTGGATTCCCGACCTGTTCATGAAGCGCGTCGAACAGAA 19584 Query 112145 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGA 112204 |||| | ||| ||||| | || || || || || ||||| ||||| | ||||| Sbjct 19585 TGGCGACTGGACTCTCATGTGCCCTCACGAGTGCCCTGGTCTTGCCGATATCTACGGTGA 19644 Query 112205 GGAGTTTGAAGCCCTCTACACAAAGTA 112231 ||||| ||||| |||||| ||||| Sbjct 19645 CGAGTTCGAAGCTCTCTACGAGAAGTA 19671 Score = 167 bits (184), Expect = 3e-36 Identities = 492/746 (66%), Gaps = 18/746 (2%) Strand=Plus/Plus Query 112605 CACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCAC 112664 |||||||| | ||| | ||||| || ||||| || |||| ||| || | ||||| Sbjct 20093 CACCGTCCCGTCGGTGTTGGTGTACAGGGTCTTGCTGATGCTTTCCTTGCTCTTCGCCTG 20152 Query 112665 GCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCAC 112724 | || || || ||| || ||| | |||| | || || ||||| || || || Sbjct 20153 CCCTTCGAGTCTCCCGAGGCAAAGAAGCTCAACATTCAAATCTTCGAGACCATTTACCAT 20212 Query 112725 GCCGCTCTTGAGGCGAGTTCGG--AGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTG 112782 ||||| ||||| | | | | || | ||| | | || || |||| |||||| | Sbjct 20213 GCCGC-CTTGAC-CTCTTCCTGCAAGCTTGCACAAGAAGAAGGCACATACAAAACCTACG 20270 Query 112783 AGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAA-G 112841 |||| ||||||| ||| || || | || || | || |||||| || || | || | | Sbjct 20271 AGGGCTCTCCAGTTTCCCAGGGTATTCTCCAGTACGACATGTGG-AACGTCACTCCTACG 20329 Query 112842 CTTCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGT 112901 || || ||||||||| | ||||||| |||||| || | ||| |||| ||| Sbjct 20330 GATCTCTGGGACTGGGACTCGCTCAAGGCTGATATCAAGAAGCACGGTATTCGCAACTCA 20389 Query 112902 CTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGC 112961 ||| | | || || |||||||| || ||||| | ||||| | ||| || || ||| Sbjct 20390 CTTCTTGTTGCTCCTATGCCAACTGCTTCCACATCTCAAATTCTCGGTTTCAACGAGTGC 20449 Query 112962 TTTGAACCCTACACGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTTGTGAT 113020 || || || |||||| | || ||||| ||| | | || || || || || | Sbjct 20450 TTCGAGCCATACACGTCAAATATCTACTCTC-GTCGTGTGCTTGCTGGGGAATTCCAAGT 20508 Query 113021 TGTCAACAAGCAT--CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATG 113078 |||||| ||| || | | || ||| ||||| ||||| ||||| | | ||| Sbjct 20509 CGTCAACC--CATGGCTGCTCAAAGATCTCGTCGAGATGGGTCTTTGGTCGGACAACATG 20566 Query 113079 AAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAA 113138 ||| ||| || | || ||||||||| || || || ||| ||||||| ||||| Sbjct 20567 AAGAATCGTATCATTGCAGAGGGTGGTTCTATCCAGAACATTCCTAATATTCCCGATGAT 20626 Query 113139 ATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACA---TG 113195 || ||| | ||| || ||||||||||||| || | |||| || || Sbjct 20627 ATCAAGGCCCTTTACAAGACGGTTTGGGAAATCAGCC---AGCGTACCATTATCACCATG 20683 Query 113196 GCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGT 113255 || || |||||||| ||||||||||||| ||| || |||| | |||| || Sbjct 20684 GCTGCGGATCGTGGCGCCTTCATTGATCAATCTCAGAGCTTGAACATTCACATGAAAGAG 20743 Query 113256 CCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACG 113315 || || ||| |||| | |||| |||||| | ||||||||| ||||||||| || Sbjct 20744 CCGACCATGGGCAAGATTACTTCCATGCACTTTGCTGGTTGGAAGATGGGTCTCAAGACT 20803 Query 113316 GGGATGTATTACCTCCGATCTAAGGC 113341 || ||||| ||||||||| | | ||| Sbjct 20804 GGAATGTACTACCTCCGAACCATGGC 20829 >seq1169 Length=73998 Score = 131 bits (144), Expect = 2e-25 Identities = 167/226 (74%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAGTC 102166 ||| || || || | ||||| || || ||||| |||||||| || ||| || || Sbjct 49067 AGTCCCCTGCATCCGCAAGAAGGCCGACTGGGCACTGAAGTGGATTTGCGATGACAACTC 49008 Query 102167 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 102226 | ||||||| ||| ||| ||||||| || ||| ||||||||||||||| || Sbjct 49007 ---TACCTTTGCATCGCGTCTCGTCGCATTCGCAGCTGTCGAGGGTATCTTCTTCAGCGG 48951 Query 102227 TTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 102285 |||| ||| |||| | |||||||||||||| ||||||||||| || | ||||| Sbjct 48950 CGCCTT-TGCATCTATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCTTGACCTTCT 48892 Query 102286 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||||| ||||||||||| ||||||||| | ||| || ||||| Sbjct 48891 CCAACGAACTTATCTCTCGCGACGAGGGAATGCACACCGACTTTGC 48846 >seq1337 Length=120122 Score = 96.9 bits (106), Expect = 4e-15 Identities = 246/367 (67%), Gaps = 23/367 (6%) Strand=Plus/Plus Query 15936 TTCGTTGCGGCGATGACAACAATACCTGTTTCGT--TATCAAAACCATCCATCTCTGTCA 15993 ||||| | || || || |||| |||||| ||| | | ||||||||||| || |||| Sbjct 109168 TTCGTACCCGCAATAACCACAA--CCTGTTCCGTGGTGTTGAAACCATCCATTTCAGTCA 109225 Query 15994 AAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTT 16053 | |||||| | || ||||||||||||||| | ||| ||| || || Sbjct 109226 GGATCTGGTTGAGCGTGCTTTCCCGTTCATCATTTCC------ACCGCCAAAGTTGTTTT 109279 Query 16054 GC--------TTTCCCAC-GGCATCAATCTCATCAATGAAGACGATGCATGGT-TGATTT 16103 | ||||||| ||| || || ||||||||||| | |||||| ||| || | | Sbjct 109280 TCGATCTCGATTTCCCAATGGCGTCGATTTCATCAATGAAAATGATGCAAGGTGTGTTCT 109339 Query 16104 TCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCC 16163 || | ||| | || ||||| || ||||| | || ||||| |||||||||||| Sbjct 109340 TC-CTCGCGGTGGCGAACAGATCTCGAACACGAGATGGACCGACACCCACAAACATCTCC 109398 Query 16164 ACAAAGTTTGCGGCG-GAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCG 16222 || || | | | || ||| | || ||| || ||| |||||| || || | ||| Sbjct 109399 ACGAACTCAGAGCCGCTCACACT-GAAGAATGGAACACCAGATTCGCCAGCTGTTGCTTT 109457 Query 16223 GGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTT 16282 |||||| || ||||| || || || || || | || | |||||| || |||||||| Sbjct 109458 GGCGAGCAGCGTCTTGCCAGTTCCAGGAGGCCCAGAAAGAATGGCACCGCGAGGAATCTT 109517 Query 16283 GGCGCCA 16289 || ||| Sbjct 109518 CGCACCA 109524 >seq249 Length=124404 Score = 96.9 bits (106), Expect = 4e-15 Identities = 246/367 (67%), Gaps = 23/367 (6%) Strand=Plus/Minus Query 15936 TTCGTTGCGGCGATGACAACAATACCTGTTTCGT--TATCAAAACCATCCATCTCTGTCA 15993 ||||| | || || || |||| |||||| ||| | | ||||||||||| || |||| Sbjct 10463 TTCGTACCCGCAATAACCACAA--CCTGTTCCGTGGTGTTGAAACCATCCATTTCAGTCA 10406 Query 15994 AAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTT 16053 | |||||| | || ||||||||||||||| | ||| ||| || || Sbjct 10405 GGATCTGGTTGAGCGTGCTTTCCCGTTCATCATTTCC------ACCGCCAAAGTTGTTTT 10352 Query 16054 GC--------TTTCCCAC-GGCATCAATCTCATCAATGAAGACGATGCATGGT-TGATTT 16103 | ||||||| ||| || || ||||||||||| | |||||| ||| || | | Sbjct 10351 TCGATCTCGATTTCCCAATGGCGTCGATTTCATCAATGAAAATGATGCAAGGTGTGTTCT 10292 Query 16104 TCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCC 16163 || | ||| | || ||||| || ||||| | || ||||| |||||||||||| Sbjct 10291 TC-CTCGCGGTGGCGAACAGATCTCGAACACGAGATGGACCGACACCCACAAACATCTCC 10233 Query 16164 ACAAAGTTTGCGGCG-GAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCG 16222 || || | | | || ||| | || ||| || ||| |||||| || || | ||| Sbjct 10232 ACGAACTCAGAGCCGCTCACACT-GAAGAATGGAACACCAGATTCGCCAGCTGTTGCTTT 10174 Query 16223 GGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTT 16282 |||||| || ||||| || || || || || | || | |||||| || |||||||| Sbjct 10173 GGCGAGCAGCGTCTTGCCAGTTCCAGGAGGCCCAGAAAGAATGGCACCGCGAGGAATCTT 10114 Query 16283 GGCGCCA 16289 || ||| Sbjct 10113 CGCACCA 10107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620729364409600