Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148295.1_202016-10-31] 1,680 sequences; 40,142,277 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1579 158 3e-33 seq1455 104 5e-17 seq537 89.7 1e-12 >seq1579 Length=49950 Score = 158 bits (174), Expect = 3e-33 Identities = 147/187 (79%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| |||||||| || || || ||||| |||| || |||| ||||| ||| Sbjct 29486 ACAAGGTGAAGTGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCG 29545 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| | || || |||||||| || || || || ||||||||| Sbjct 29546 AGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGA 29605 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || |||||||| | || || |||||||| | ||||||| Sbjct 29606 ATCTTGGTCTTGACGTTGTCGATGGTGTCGCTAGACTCAACCTCAAGGGTGATCGTCTTT 29665 Query 195112 CCTGTCA 195118 ||||||| Sbjct 29666 CCTGTCA 29672 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || ||||| || || || ||||| ||| || || | |||||||| | |||||| || Sbjct 29042 GTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGTCCATCTTCCAACTGCTTTCCG 29101 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 |||||||| || || || |||||||||||||| ||||| ||||| || || || |||| Sbjct 29102 GCGAAGATGAGGCGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGATCTTCGTCTTG 29161 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 ||||| || |||||||| || ||| ||||| || |||| ||||| || || | || Sbjct 29162 ACGTTGTCGATGGTGTCAGAGGATTCAACTTCTAGTGTAATAGTCTTGCCGGTGAGGGTC 29221 Query 195124 TTTACGAACACTTGCAT 195140 || ||||| | |||||| Sbjct 29222 TTCACGAAGATTTGCAT 29238 Score = 131 bits (144), Expect = 4e-25 Identities = 157/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTT 194989 ||| | ||| |||||||| || || || || ||||| |||| |||| || | ||||||| Sbjct 29257 AACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAAG-GTGCGGCCATCTT 29315 Query 194990 CGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTT 195049 |||| ||||| || |||||||| | || || |||||||| || || || || ||||| | Sbjct 29316 CGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCCT 29375 Query 195050 GAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCT 195109 | || || |||||| || || |||||||| || || || || | ||| | |||| Sbjct 29376 GGATCTTGGTCTTGACATTGTCGATGGTGTCTGATGACTCAACCTCCAAGGTGATGGTCT 29435 Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || |||||||| || ||||| | |||||| Sbjct 29436 TGCCCGTCAAAGTCTTGACGAAGATTTGCAT 29466 >seq1455 Length=38904 Score = 104 bits (114), Expect = 5e-17 Identities = 143/196 (73%), Gaps = 3/196 (2%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCT 194995 ||||| ||| | | | ||||| || ||||| ||| |||| || | ||||| || | | Sbjct 28518 GTGAAAAGTCG-CACCTTTTGGATGTTGTAGTCGCTCAAG-GTACGTCCATCCTCCAATT 28575 Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 |||| || || ||||| | ||| ||||||||||| ||||| || || |||||||| || | Sbjct 28576 GCTTTCCAGCAAAGATTAATCGCTGTTGGTCTGGCGGAATTCCCTCCTTGTCTTGGATCT 28635 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 | |||||| || || || ||||| || || || |||||||| | ||||| || | Sbjct 28636 TGGTCTTGACATTGTCGATAGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCG 28695 Query 195116 TCAAAGTTTTTACGAA 195131 | | ||||| ||||| Sbjct 28696 TGAGGGTTTTGACGAA 28711 >seq537 Length=52655 Score = 89.7 bits (98), Expect = 1e-12 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || ||||| || | || || | ||||||||| Sbjct 29350 ACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGATAGGGTGCGTCCATCTTCG 29409 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 |||||||| || |||||||| | || || |||||||| || || ||||| |||||| Sbjct 29410 AGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGGATTCCTTCCTTGTCT 29466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109457718408560