Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148295.1_202016-10-31] 1,680 sequences; 40,142,277 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq196 138 2e-27 seq1169 123 5e-23 >seq196 Length=40614 Score = 138 bits (152), Expect = 2e-27 Identities = 475/733 (65%), Gaps = 12/733 (2%) Strand=Plus/Minus Query 221942 GTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGA 222001 ||| ||||| | | |||| |||||||| ||| | || || || ||| | || Sbjct 19663 GTAGAGAGCTT--CGAACTCGTCACCGTAGATATCGGCAAGACCAGGGCACTCGTGAGGG 19606 Query 222002 CACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCAC 222061 ||||| ||| |||||| || | || ||| | || |||||| ||||| || |||||| Sbjct 19605 CACATGAGAGTCCAGTCGCCATTCTGTTCGACGCGCTTCATGAACAGGTCGGGAATCCAC 19546 Query 222062 AGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCC 222121 | || | || ||||| | | ||| || || ||||| ||| || |||||||| Sbjct 19545 AAGGCATAGAAAAGATCACGAGCACGCGCTTCTTCTTTGCCGTGGTTCTTTCTCAGATCT 19486 Query 222122 AAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGC 222181 || | | || | || |||||||| ||||| || |||| ||| | || || || ||| Sbjct 19485 AACCAGTTGAAGACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAATGCACCAGGACGC 19426 Query 222182 TTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACC 222241 ||||||||||| ||||| || | | |||| |||| || || | || || Sbjct 19425 TTGTTGCCACCTTGATCAACGTAGCGAGCAGTCGCGTCAAAGACACGGAGCATAGGAACA 19366 Query 222242 AGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTG 222301 || ||||| ||| ||||| || || |||||| | || ||| | | | | || Sbjct 19365 AGACCGTTCGATGTGCCGTTTGTTCCTCCAATGTATGATCCAGTGGCTCGGATGCGA-TG 19307 Query 222302 GCAG-ACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTC 222360 | | |||||||||||| ||| || || ||||| || || ||||||| ||||| Sbjct 19306 TATGTTAAGGCCGATACCACCAGCGGTCTTTGAAATCATAGCACAAGTCTTGAGGGTGTC 19247 Query 222361 CATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGA 222420 ||| ||||| || ||||||||| || | || || |||||||| | || | Sbjct 19246 GTAGATACCCTCGATGCTGTCCTCCTTCGTGTCAATGAGGAAGCAAGACGAGAGTTGCGG 19187 Query 222421 TTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACAT 222480 || | | | ||||| || || || || |||||| || ||||| ||||||| Sbjct 19186 TTGAGGTGTGCCTGCGTTGAAAAGTGTAGGGGAGGCGTGCGTGAAGTATTTGTTAGACAT 19127 Query 222481 CAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAAT-CTGCATGGCGCATC 222539 | ||| |||| || | | | |||| || |||||||| | | || | || | Sbjct 19126 GTAGTTGTATGTCTGTATGGCAGATTCAATGTCCTCTCCGTGAATGCCGACTGCCACA-C 19068 Query 222540 TCATGTACATGTACTGGGGCCTCTCCACAGGACCCTTGGAGC---TGGAGAGCAGGTACG 222596 |||| ||| | || || | || ||| ||||| || | ||| ||||| | Sbjct 19067 GCATGATCATATGTTGTGGACGCT---CAGCGACCTTGCCGCTTATTCGGAGTAGGTATG 19011 Query 222597 ATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGG 222656 || |||||||||||||| |||||||| | | | || |||||| ||| || | || Sbjct 19010 ATCGCTCCAGAGTCTTGAAGCCAAAGTATTGGTAATTGAAATCTCTGTCGTATACAATGG 18951 Query 222657 CGGCGTCCAGCTC 222669 | | || || ||| Sbjct 18950 CAGAGTTCAACTC 18938 Score = 87.8 bits (96), Expect = 3e-12 Identities = 296/450 (66%), Gaps = 26/450 (6%) Strand=Plus/Minus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGA 221476 |||| ||| || ||||| |||||||| ||||| ||||||| |||| ||||||||| Sbjct 20223 GTCAAGGCGGCATGGTAAATGGTCTCGAAGATTTGAATGTTGAGCTTCTTTGCCTCGGGA 20164 Query 221477 GAAGTGAAGGGCATACG--CAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATAC 221534 || |||||||| || |||| ||||| | || || || |||||||| || | || Sbjct 20163 GACTCGAAGGGCAGGCGAAGAGCA-AGGAAAG-CATCAGCAAGACCCTGTACACCAACAC 20106 Query 221535 CGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGT 221594 ||| ||| | ||| | |||| | ||||| || |||||||| |||||||| Sbjct 20105 CGACGGGACGGTGACGGGAGTTGCTGTTGTATGCTTCGGGAACGGGATAGTGGTTGACGT 20046 Query 221595 CGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGAT 221654 | || | ||||| | ||| || ||| | || || ||| || ||| | Sbjct 20045 CAATGATCTTGTTCAAGTTGCGAATGACAGTCTGGACGACTTCGTGCAACTT------GT 19992 Query 221655 TGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGC--T 221712 |||| | || | | ||||| ||| || | || || || ||| ||||| || | Sbjct 19991 TGAA-ATCA--TAGACGCCG-CGTTGAACG--TCAACGAA--GGTT---GGCAAAGCCAT 19943 Query 221713 G---GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACA 221769 | |||| ||| || || || ||||| || | |||| |||||||| || || Sbjct 19942 GGATGCCAAGTTGCAAACAGCAACCTCATCAGGCGCAGAGTACTCAATGATCTCAGTGCA 19883 Query 221770 GAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTC 221829 || ||| || ||||| |||| || || ||||| |||||| ||| ||| || Sbjct 19882 CAGATTGGAGCTGCGAATGGTTCCCAAGTTCTTCTGATTGCTCTTGCGGTTGCAAGCATC 19823 Query 221830 CTTGTAGAGCATAAAGGGACCGCCAGTCTC 221859 ||||| ||||| || || ||||||||| Sbjct 19822 TTTGTAAAGCATGAAAGGGTTGCCAGTCTC 19793 >seq1169 Length=73998 Score = 123 bits (136), Expect = 5e-23 Identities = 337/519 (65%), Gaps = 17/519 (3%) Strand=Plus/Minus Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACG 25869 ||| ||||| | |||||| ||||| |||||||||| | | | | |||| Sbjct 49063 CCCTGCATCCGCAAGAAGGCCGACTGGGCACTGAAGTGGATTTGCGATGACAACTCTACC 49004 Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929 |||| ||| || || || || || ||||| ||||| ||||| |||||||| | ||| Sbjct 49003 TTTGCATCGCGTCTCGTCGCATTCGCAGCTGTCGAGGGTATCTTCTTCAGCGGCGCCTTT 48944 Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAG 25989 || | ||||||||||||||| || || ||||||||| || ||| |||||||| Sbjct 48943 GCATCTATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCTTGACCTTCTCCAACGAA 48884 Query 25990 CTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCAC 26049 || ||| | |||||||| | |||| || ||||||||||| |||| | ||| Sbjct 48883 CTTATCTCTCGCGACGAGGGAATGCACACCGACTTTGCCTGCCTCCTCTTC-----TCAC 48829 Query 26050 TTGCTCCAC---AAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAG 26106 |||| || || ||||| | || ||||| | ||||||| ||||| || | Sbjct 48828 -AGCTCAACAAGAAGCCTTCGCCTGAAGCCGTCCGCGCCATCATCACCGAGGCAGTACAA 48770 Query 26107 ATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGA 26166 || ||| |||| || | ||||||||| | Sbjct 48769 ATTGAGCAGGAATTCTTGAGCGAAGCATTACCGTGCAGATTGCTCGGCATGAACTCTACC 48710 Query 26167 CTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTG--TGCCAGCTGGGACTCG 26224 |||||| |||| ||||| |||| ||| || || | ||| || ||| ||| || | Sbjct 48709 CTCATGTGCCAGTACATCGAGTTTGTTGCTGATCGTCTCTTGCTTGC--GCTTGGCAATG 48652 Query 26225 CCAGACTCTACAGTACGCC--TAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGG 26282 || | |||| ||||| ||||| |||||||| ||||| |||||||| | | || Sbjct 48651 TCAAGGTTTACA--ACGCCGTCAACCCCTTCGACTTCATGGAGAACATATCTCTTGCCGG 48594 Query 26283 GAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 ||||| ||||| || || ||| | ||||| || || || Sbjct 48593 AAAGACTAACTTTTTCGAGAAGCGCGTCGGTGATTACCA 48555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928825294259200