Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148295.1_202016-10-31] 1,680 sequences; 40,142,277 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1169 87.8 5e-12 seq938 84.2 6e-11 seq313 84.2 6e-11 >seq1169 Length=73998 Score = 87.8 bits (96), Expect = 5e-12 Identities = 117/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 133499 TTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTC 133558 ||||| | |||||||| || || || | || ||||| || || ||||| || || || Sbjct 49003 TTTGCATCGCGTCTCGTCGCATTCGCAGCTGTCGAGGGTATCTTCTTCAGCGGCGCCTT- 48945 Query 133559 TGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGA 133617 ||| ||||| || ||||| || ||||| ||| | | || || || || || ||||| Sbjct 48944 TGCATCTATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCTTGACCTTCTCCAACGA 48885 Query 133618 ACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 |||||| || | ||||||| | | |||||||| |||||| Sbjct 48884 ACTTATCTCTCGCGACGAGGGAATGCACACCGACTTTGCC 48845 >seq938 Length=79388 Score = 84.2 bits (92), Expect = 6e-11 Identities = 107/147 (73%), Gaps = 8/147 (5%) Strand=Plus/Minus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 ||||| | | ||| | |||||||||||||||||| || ||||| ||||||||||| ||| Sbjct 61182 GCACCATAGGCAATAAGACAATCACGCTCCATTTCTCCCAAACGGAGACCACCATCTCGA 61123 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACC----GATGGAGCGGCT 251600 || | ||| || | || |||||||| || | | || ||||| | | ||||| Sbjct 61122 GCACGACCTTCAGTGGGTTGACGAGTAAGCAGAGCGATTGGACCAGTAGCTCGAGCG--- 61066 Query 251601 ATGTTGCTTATCATTTACCATATGCTT 251627 || |||||| | ||||||||||| Sbjct 61065 -TGCATCTTATCCTGGACCATATGCTT 61040 >seq313 Length=52749 Score = 84.2 bits (92), Expect = 6e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642 ||||| | ||| ||||| |||||||||||| | || || ||||| || ||||| || Sbjct 29274 CTTGACCAGACGCCGCTGGATATAACCAGTTTCGGCAGTCTTGACAGCGGTGTCAATGAG 29333 Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAA 302702 ||| | ||||| |||| || || ||||| | ||| | ||| || || | | | | Sbjct 29334 ACCCTCTCGACCTGCCATGGCGTGAAAGAAGAACTCATGCGGAGTCAGACCGCGCAAATA 29393 Query 302703 GGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCA 302761 ||| |||||||||| || || | || ||||||| ||| |||| ||| || |||| Sbjct 29394 CGAGTTCTCAACGAATCCCCGAGATTCTGGCGAATAATCGTCTTTGGCAAAATGAGGCA 29452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471785919126160