Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148295.1_202016-10-31] 1,680 sequences; 40,142,277 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq925 129 7e-24 seq196 116 5e-20 seq1169 114 2e-19 seq1356 105 8e-17 seq136 105 8e-17 >seq925 Length=69309 Score = 129 bits (142), Expect = 7e-24 Identities = 95/111 (86%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||||||||||||||||| |||||| | || |||||| | || |||||| | || ||||| Sbjct 48945 GCCGCCAACTACCTCGATATCAAGGCCCTTCTCGATGTCGGCTGCAAGACCGTTGCCAAT 49004 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||||||||||||||||| || |||||||||||||| ||||| |||||| || Sbjct 49005 ATGATCAAGGGCAAGTCCCCAGAGGAGATCCGCAAAACCTTCAACATCCAG 49055 >seq196 Length=40614 Score = 116 bits (128), Expect = 5e-20 Identities = 180/257 (70%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 || || |||||||| || || ||| |||||| |||||||| || || || ||||| || Sbjct 19413 TGATCAACGTAGCGAGCAGTCGCGTCAAAGACACGGAGCATAGGAACAAGACCGTTCGAT 19354 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 |||||| || || | | ||| | || | ||| || | || | || |||| Sbjct 19353 GTGCCGTTTGTTCCTCCAATGTATGATCCAGTGGCTCGGATGCGATGTATGTTAAGGCCG 19294 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || || || || | ||| || || | || || ||||| ||||||||||| |||||| Sbjct 19293 ATACCACCAGCGGTCTTTGAAATCATAGCACAAGTCTTGAGGGTGTCGTAGATACCCTCG 19234 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 || ||| ||||| |||| | ||| ||||| |||||| |||||| || | ||||| Sbjct 19233 ATGCTGTCCTCCTTCGTGTCAATGAGGAAGCAAGACGAGAGTTGCGGTTGAGGTGTGCCT 19174 Query 1630306 GCGTTGAAGAGCGTGGG 1630322 |||||||| || || || Sbjct 19173 GCGTTGAAAAGTGTAGG 19157 >seq1169 Length=73998 Score = 114 bits (126), Expect = 2e-19 Identities = 222/318 (70%), Gaps = 10/318 (3%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || |||||| |||||||||||| ||||| || | || || || Sbjct 48549 GCCTTCTGGTAATCACCGACGCGCTTCTCGAAAAAGTTAGTCTTTCCGGCAAGAGATATG 48608 Query 868751 AACTCCATCCACGGGAACGGGTTG--GGCGTCTTGTAGTGCTTTTCGCATCCGAGCG-AC 868807 |||||| | ||| |||||| ||||| |||| ||| | || |||| | Sbjct 48609 TTCTCCATGAAGTCGAAGGGGTTGACGGCGT--TGTAAACCTTGACATTGCCAAGCGCAA 48666 Query 868808 GCGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCG 868867 || || || || || || ||||||||||||||||||||||||||| | |||||||||| Sbjct 48667 GCAAG-AGACGATCAGCAACAAACTCGATGTACTGGCACATGAGGGTAGAGTTCATGCCG 48725 Query 868868 A-TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGAC 868926 | | | || ||| | | ||||||| || || | ||| || | || |||||| Sbjct 48726 AGCAATCTGCA-CGGTAATGCTTCGCTCAAGAATTCCTGCTCAATTTGTACTGCCTCGGT 48784 Query 868927 GATGATCTGCCTGGGC-ACGTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGC 868985 |||||| || || | | || | ||| ||||| ||| |||| | | |||| |||| Sbjct 48785 GATGAT-GGCGCGGACGGCTTCAGGCGAAGGCTTCTTGTTGAGCTGTGAGAAGAGGAGGC 48843 Query 868986 AGGCAAAGTCGCAGTGCA 869003 ||||||||||| ||||| Sbjct 48844 AGGCAAAGTCGGTGTGCA 48861 Score = 107 bits (118), Expect = 2e-17 Identities = 142/192 (74%), Gaps = 5/192 (3%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||||||| ||| | ||||||| |||| | |||||||||||| ||||||||| Sbjct 48864 CCCTCGTCGCGAGAGATAAGTTCGTTGGAGAAGGTCAAGCCGGGCATGAGACCGCGCTTC 48923 Query 869240 TTGAGCCAAAAGAT-GGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 |||||||| ||||| | ||| || ||| ||| ||||| |||||||| || || || Sbjct 48924 TTGAGCCAGAAGATAGATGCA-AAGGCGCCGCTGAAGAAGATACCCTCGACAGCTGCGAA 48982 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 ||| ||| ||| |||||| || || | || | | |||||||||| ||||| Sbjct 48983 TGCGACGAGACGCGATGCAAAG--GTAGA-GTTGTCATCGCAAATCCACTTCAGTGCCCA 49039 Query 869359 GTCGGCCTTTTT 869370 ||||||||| || Sbjct 49040 GTCGGCCTTCTT 49051 >seq1356 Length=252220 Score = 105 bits (116), Expect = 8e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 |||||||| || ||||| || || ||||| || || || |||| ||| || || ||| Sbjct 174560 GACAGCATTGGTGGCACAGTCACCTGCGTTCTGCGTAATGTACCGGTAGGACTGGGAGAG 174501 Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 || ||||||||||| | |||||| ||| || ||||||||||| ||||| ||| | || Sbjct 174500 CCTTGCTTTGACAAATTGGAGGCCAAGCTTGCACACGCCATGCTCTCGATACCGTCGACG 174441 Query 19167 AAGGGATTCGAGATTGGCAGCGGGTT 19192 || |||||||| || ||| ||||| Sbjct 174440 AAAGGATTCGAAATCGGCTCTGGGTT 174415 >seq136 Length=252077 Score = 105 bits (116), Expect = 8e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 |||||||| || ||||| || || ||||| || || || |||| ||| || || ||| Sbjct 77661 GACAGCATTGGTGGCACAGTCACCTGCGTTCTGCGTAATGTACCGGTAGGACTGGGAGAG 77720 Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 || ||||||||||| | |||||| ||| || ||||||||||| ||||| ||| | || Sbjct 77721 CCTTGCTTTGACAAATTGGAGGCCAAGCTTGCACACGCCATGCTCTCGATACCGTCGACG 77780 Query 19167 AAGGGATTCGAGATTGGCAGCGGGTT 19192 || |||||||| || ||| ||||| Sbjct 77781 AAAGGATTCGAAATCGGCTCTGGGTT 77806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107001331332560