Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148295.1_202016-10-31] 1,680 sequences; 40,142,277 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq925 129 9e-24 seq196 96.9 5e-14 seq1169 91.5 2e-12 >seq925 Length=69309 Score = 129 bits (142), Expect = 9e-24 Identities = 95/111 (86%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||||||||||||||||| |||||| |||| |||||| | || ||||||||||| ||||| Sbjct 48945 GCCGCCAACTACCTCGATATCAAGGCCCTTCTCGATGTCGGCTGCAAGACCGTTGCCAAT 49004 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAG 2035757 | |||||||||||||| || ||||| |||||||| ||||| |||||| || Sbjct 49005 ATGATCAAGGGCAAGTCCCCAGAGGAGATCCGCAAAACCTTCAACATCCAG 49055 >seq196 Length=40614 Score = 96.9 bits (106), Expect = 5e-14 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 2071819 GGGCAAAAGAGCGACCAGTCGCCGC-CAGTCACCACGCGGCGCATAAACAGGTCGCACGT 2071877 ||||| | ||| | ||||||||| | || | ||||| ||| ||||||||| | Sbjct 19608 GGGCACATGAGAGTCCAGTCGCCATTCTGTT-CGACGCGCTTCATGAACAGGTCGGGAAT 19550 Query 2071878 CCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAG 2071937 ||||| | | || || ||||| || || || || || ||||||||||||||| |||| Sbjct 19549 CCACAAGGCATAGAAAAGATCACGAGCACGCGCTTCTTCTTTGCCGTGGTTCTTTCTCAG 19490 Query 2071938 GTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTT 2071997 || | ||||| || || ||||||||||| ||||| |||||| ||| || || || Sbjct 19489 ATCTAACCAGTTGAAGACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAATGCACCAGG 19430 Query 2071998 GCGCTTGCCGCCGCC 2072012 |||||| ||| || Sbjct 19429 ACGCTTGTTGCCACC 19415 >seq1169 Length=73998 Score = 91.5 bits (100), Expect = 2e-12 Identities = 205/300 (68%), Gaps = 6/300 (2%) Strand=Plus/Plus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 || || || |||||| |||||||||||| ||||| || | || || || |||||| Sbjct 48558 TAATCACCGACGCGCTTCTCGAAAAAGTTAGTCTTTCCGGCAAGAGATATGTTCTCCATG 48617 Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCG-ACGCAAGCAGGCG 794026 | ||| |||||| | | ||| ||| | || |||| | ||||| || || Sbjct 48618 AAGTCGAAGGGGTTGACGGCGTTGTAAACCTTGACATTGCCAAGCGCAAGCAAG-AGACG 48676 Query 794027 GTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGA-TGAGCGCCA 794085 || || || || || ||||||||||||||||||| | ||||||||||| | | || Sbjct 48677 ATCAGCAACAAACTCGATGTACTGGCACATGAGGGTAGAGTTCATGCCGAGCAATCTGCA 48736 Query 794086 CGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCTGCC 794145 | || | | ||||| | || || | ||| || | || |||||| ||||||| || Sbjct 48737 C-GGTAATGCTTCGCTCAAGAATTCCTGCTCAATTTGTACTGCCTCGGTGATGAT-GGCG 48794 Query 794146 TGGGC-ACGTCGGACGACGGCTTGTCGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTCG 794204 || | | || | ||| ||||| | | |||| | | |||| ||||||||||||||| Sbjct 48795 CGGACGGCTTCAGGCGAAGGCTTCTTGTTGAGCTGTGAGAAGAGGAGGCAGGCAAAGTCG 48854 Score = 89.7 bits (98), Expect = 8e-12 Identities = 136/192 (71%), Gaps = 5/192 (3%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||||||| ||| | ||||||| ||| | |||||||||||| ||||||||| Sbjct 48864 CCCTCGTCGCGAGAGATAAGTTCGTTGGAGAAGGTCAAGCCGGGCATGAGACCGCGCTTC 48923 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| ||||| | || ||| ||| ||||| |||||||| || || || Sbjct 48924 TTGAGCCAGAAGATAGATGCAAAGGCGCCGCTGAAGAAGATACCCTCGACAGCTGCGAAT 48983 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAG-GCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 ||||||| ||| ||||| || || | || | | |||||||||| ||||| Sbjct 48984 GCGACGAGACGCGATGCAAAGGT----AGAGTTGTCATCGCAAATCCACTTCAGTGCCCA 49039 Query 794520 CTCTGCCTTTTT 794531 || ||||| || Sbjct 49040 GTCGGCCTTCTT 49051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916067690737520