Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148295.1_202016-10-31] 1,680 sequences; 40,142,277 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1169 132 5e-26 seq196 118 1e-21 seq1579 107 2e-18 >seq1169 Length=73998 Score = 132 bits (146), Expect = 5e-26 Identities = 345/520 (66%), Gaps = 17/520 (3%) Strand=Plus/Plus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || ||| || |||||||| ||||| |||||||| || || || | | || ||||| | Sbjct 48554 CTGGTAATCACCGACGCGCTTCTCGAAAAAGTTAGTCTTTCCGGCAAGAGATATGTTCTC 48613 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470 ||| || ||||| |||||| ||||| | || | ||| | | | | || Sbjct 48614 CATGAAGTCGAAGGGGTTGACGGCGTTGTAAACCTTGACATTGCCAAGCGCAAGCAAGAG 48673 Query 120471 TCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAA-CG 120529 || || || |||||||| ||||||| ||||||| | ||||||||| ||||| | Sbjct 48674 ACGATCAGCAACAAACTCGATGTACTGGCACATGAGGGTAGAGTTCATGCCGAGCAATCT 48733 Query 120530 CCACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGG 120589 ||| || || || | || || |||| |||||| | || ||||| ||| |||| Sbjct 48734 GCAC-GGTAATGCTTCGCTCAAGAATTCCTGCTCAATTTGTACTGCCTCGGTGATGATGG 48792 Query 120590 CGAGCATAGTGTG-GCCG--GGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACG 120646 || | | | | | || ||| |||||| || || | | || ||||| | Sbjct 48793 CGCGGACGGCTTCAGGCGAAGGCTTCTTGT------TGAGCTGTGAGAAGAGGAGGCAGG 48846 Query 120647 CAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGG 120706 ||||||| ||||||| ||||||||||| || || || |||||| || |||| ||||| Sbjct 48847 CAAAGTCGGTGTGCATTCCCTCGTCGCGAGAGATAAGTTCGTTGGAGAAGGTCAAGCCGG 48906 Query 120707 GCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGC 120766 |||||| || | |||||| |||| || | |||||| ||| ||||| | | Sbjct 48907 GCATGAGACCGCGCTTCTTGAGCCAGAAGATAGATGCAAAGGCGCCGCTGAAGAAGATAC 48966 Query 120767 CCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCG---A 120823 |||| || || || ||||| | ||| || || || | ||| ||| | Sbjct 48967 CCTCGACAGCTGCGAATGCGACGAGACGCGATGCAAAGGT---AGAGTTGTCATCGCAAA 49023 Query 120824 TCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGG 120863 ||||||||| ||||| |||||||| ||||| | ||| || Sbjct 49024 TCCACTTCAGTGCCCAGTCGGCCTTCTTGCGGATGCAGGG 49063 >seq196 Length=40614 Score = 118 bits (130), Expect = 1e-21 Identities = 598/936 (64%), Gaps = 38/936 (4%) Strand=Plus/Minus Query 148062 TGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGA--GT-CGCTTTATCTTCATC 148118 || |||||||| |||||||| || || ||||| || | || |||| | || Sbjct 20712 TGATCAATGAAGGCGCCACGATCCGCAGCCATGGTGATAATGGTACGCTGGCTG---ATT 20656 Query 148119 TCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACC 148178 ||||| |||||||||| || |||||||| ||||||||| ||| ||| | Sbjct 20655 TCCCAAACCGTCTTGTAAAGGGCCTTGATATCATCGGGAATATTAGGAATGTTCTGGATA 20596 Query 148179 GAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATC 148238 || || | | |||| || |||| ||| | ||||| | || | ||||| Sbjct 20595 GAACCACCCTCTGCAATGATACGATTCTTCATGTTGTCCGACCAAAGACCCATCTCGACG 20536 Query 148239 AGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGA 148298 || || | || ||| | | || || || || || || || || ||||| || || ||| Sbjct 20535 AGATCTTTGAGCAGCCATGGGTTGACGACTTGGAATTCCCCAGCAAGCACACGACG-AGA 20477 Query 148299 -TACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGT 148357 || | || ||| | || || || |||||||| || | ||| || | || | Sbjct 20476 GTAGATATTTGACGTGTATGGCTCGAAGCACTCGTTGAAACCGAGAATTTGAGATGTGGA 20417 Query 148358 TGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCG 148417 || || ||||| || || || || |||||||| | |||| | || || || | Sbjct 20416 AGCAGTTGGCATAGGAGCAACAAGAAGTGAGTTGCGAATACCGTGCTTCTTGATATCAGC 20357 Query 148418 CTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAG 148477 ||| || | ||||||||||||| || || || |||||||||||||||||||| || Sbjct 20356 CTTGAGCGAGTCCCAGTCCCAGAGATCCGTAGGAGTGACGTTCCACATGTCGTACTGGAG 20297 Query 148478 AATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAG 148537 ||| || || | | || ||||||||| | |||| | || | | || || Sbjct 20296 AATACCCTGGGAAACTGGAGAGCCCTCGTAGGTTTTGTATGTGCCTTCTTCTTGTGCAAG 20237 Query 148538 TTCGCAGCTCGCC-TCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCA 148596 | |||| | || || ||| | | |||||| |||||| ||||| |||||||| Sbjct 20236 CTTGCAGGAAGAGGTCAAG-GCGGCATGGTAAATGGTCTCGAAGATTTGAATGTTGAGCT 20178 Query 148597 GCGCCGCCGACTCGCTT---TCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGC 148653 | ||| ||| ||| | |||| || || | || || || ||||| | Sbjct 20177 TCTTTGCC---TCGGGAGACTCGAAGGGCAGGCGAAGAGCAAGGAAAGCATCAGCAAGAC 20121 Query 148654 CCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCG 148713 ||||||| || || || | ||| ||||| |||| | | || || || || Sbjct 20120 CCTGTACACCAACACCGACGGGACGGTGACGGGAGTTGCTGTTGTATGCT-TCGGGAACG 20062 Query 148714 G-ATAGTGGTTGCGGTCGATGATCTTGT-CAAGATTGCGCACCACCACCTTTGTAATTCT 148771 | |||||||||| ||| |||||||||| |||| ||||| | || || | | Sbjct 20061 GGATAGTGGTTGACGTCAATGATCTTGTTCAAG-TTGCGAATGACAGTCTGGACGACTTC 20003 Query 148772 GCGCAGCAATTCAAAATCGTAC--------TTGT-CATCTACGATGCATCGGTTCACGGC 148822 | ||| | | ||||| || ||| | || |||| | | | || || Sbjct 20002 GTGCAACTTGTTGAAATCATAGACGCCGCGTTGAACGTCAACGAAGGTTGG---CAAAGC 19946 Query 148823 GATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGC 148882 || || || | ||||| || || |||||| || || |||||| | |||||| | Sbjct 19945 CATGGATGCCAAGTTGCAAACAGCAACCTCATCAGGCGCAGAGTACTCAATGATCTCAGT 19886 Query 148883 GCACAGATTG---CTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCA 148939 |||||||||| |||| || | |||| |||||| ||||||||||||| |||||| Sbjct 19885 GCACAGATTGGAGCTGCGAATGGTT---CCCAAGTTCTTCTGATTGCTCTTGCGGTTGCA 19829 Query 148940 CGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTC 148975 || || ||||| |||||| | || |||||| || Sbjct 19828 AGCATCTTTGTAAAGCATGAAAGGGTTGCCAGTCTC 19793 >seq1579 Length=49950 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| || ||||| || ||||| ||| || ||| | | | || ||||| |||||||| Sbjct 29270 GTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCA-TCTTCGAGTTGCTTGCC 29328 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | ||||||||||| || ||||| || |||||||| |||||| ||| Sbjct 29329 GGCGAAGATCAAGCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGGATCTTGGTCTT 29388 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||| | | ||| || || | ||||| ||| ||||| |||| ||| Sbjct 29389 GACATTGTCGATGGTGTCTGATGACTCAACCTCCAAGGTGATGGTCTTGCCCGTCAAAGT 29448 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| || ||||| Sbjct 29449 CTTGACGAAGATTTGCAT 29466 Score = 105 bits (116), Expect = 6e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| ||||| || ||||| |||| || ||| | | | || || | Sbjct 29033 AAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGTCCA-TCTTCCAA 29091 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| | ||||| ||||||||||| ||||| || ||||||||||| ||| Sbjct 29092 CTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGAT 29151 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | || | ||||| | || || || || | || | || ||||| Sbjct 29152 CTTCGTCTTGACGTTGTCGATGGTGTCAGAGGATTCAACTTCTAGTGTAATAGTCTTGCC 29211 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || || ||||| || ||||| Sbjct 29212 GGTGAGGGTCTTCACGAAGATTTGCAT 29238 Score = 86.0 bits (94), Expect = 6e-12 Identities = 126/176 (72%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| ||| | || | | | ||||||||||||||||| Sbjct 29498 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCA-TCCTCGAGCTGCTTGCC 29556 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | ||||||||||| || ||||| || |||||||| ||||| ||| Sbjct 29557 GGCGAAGATCAAGCGCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGAATCTTGGTCTT 29616 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCA 133638 || | || | |||||| | | ||| || || | ||||| || || || |||| Sbjct 29617 GACGTTGTCGATGGTGTCGCTAGACTCAACCTCAAGGGTGATCGTCTTTCCTGTCA 29672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483410648163200