Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148295.1_202016-10-31] 1,680 sequences; 40,142,277 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq196 185 1e-41 seq1169 96.9 4e-15 seq529 93.3 5e-14 >seq196 Length=40614 Score = 185 bits (204), Expect = 1e-41 Identities = 419/627 (67%), Gaps = 11/627 (2%) Strand=Plus/Minus Query 111464 TACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTG 111523 ||||| |||||| ||||| ||||| ||||| |||| ||||| || || | Sbjct 19671 TACTTCTCGTAGAGAGCTTCGAACTCGTCACCGTAGATATCGGCAAGACCAGGGCACTCG 19612 Query 111524 TCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGA 111583 | || || | |||| ||| | ||| | || || ||||||||||| ||||| ||| Sbjct 19611 TGAGGGCACATGAGAGTCCAGTCGCCATTCTGTTCGACGCGCTTCATGAACAGGTCGGGA 19552 Query 111584 ATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT 111643 ||||||| || | || ||||| | | || || ||||| | || ||||| || Sbjct 19551 ATCCACAAGGCATAGAAAAGATCACGAGCACGCGCTTCTTCTTTGCCGTGGTTCTTTCTC 19492 Query 111644 AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCC 111703 | || | | | | || ||| |||||||||||||| || |||| |||| || | Sbjct 19491 AGATCTAACCAGTTGAAGACATCGGCGTGCCATGGCTCGAGGTAGATGGCGA---ATGCA 19435 Query 111704 TTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGC 111757 ||||| ||| |||||| || ||||| || || |||| ||| || || ||| Sbjct 19434 CCAGGACGCTTGTTGCCACCTTGATCAACGTAGCGAGCAGTCGCGTCAAAGACACGGAGC 19375 Query 111758 ATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTC 111817 || |||| || ||| | ||| || ||||| || | ||| ||| | |||||| Sbjct 19374 ATAGGAACAAGACCGTTCGATGTGCCGTTTGTTCCTCCAATGTATGATCCAGTGGCTCGG 19315 Query 111818 ACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTA 111877 | ||| |||| | || ||||| ||||| |||||| || ||||| | | Sbjct 19314 ATGCGATGTATGTTAAGGCCGATACCACCAGCGGTCTTTGAAATCATAGCACAAGTCTTG 19255 Query 111878 AGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGAC 111937 || || | |||||||| | ||| ||||||||| || | || ||||||||| || Sbjct 19254 AGGGTGTCGTAGATACCCTCGATGCTGTCCTCCTTCGTGTCAATGAGGAAGCAAGACGAG 19195 Query 111938 ATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT 111997 | |||||| ||||| || || ||||| || || || | ||||| |||| || | Sbjct 19194 AGTTGCGGTTGAGGTGTGCCTGCGTTGAAAAGTGTAGGGGAGGCGTGCGTGAA-GTATTT 19136 Query 111998 -TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGAT 112056 | ||||| | || |||||||| | | |||| |||||||| || ||||| ||||||| Sbjct 19135 GTTAGACATGTAGTTGTATGTCTGTATGGCAGATTCAATGTCCTCTCCGTGAATGCCGAC 19076 Query 112057 TGCGACCCGCATGAACATGTACTGTGG 112083 ||| || ||||||| ||| | ||||| Sbjct 19075 TGCCACACGCATGATCATATGTTGTGG 19049 Score = 123 bits (136), Expect = 3e-23 Identities = 683/1076 (63%), Gaps = 24/1076 (2%) Strand=Plus/Minus Query 110354 GCCTTTGATCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGC 110413 ||| | | |||||| |||||||| || |||||||| || ||||| | | ||| Sbjct 20829 GCCATGGTTCGGAGGTAGTACATTCCAGTCTTGAGACCCATCTTCCAACCAGCAAAGTGC 20770 Query 110414 ATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGG 110473 || |||| | |||| ||| || || || |||| | ||||| || ||| ||| Sbjct 20769 ATGGAAGTAATCTTGCCCATGGTCGGCTCTTTCATGTGAATGTTCAAGCTCTGAGATTGA 20710 Query 110474 TCAATGAAGCGCCCCCGTTGTGCCGCCAT----ATCAATGACATCCTTCATCTTAATTTC 110529 ||||||||| || || | || ||||| || |||| | || | ||||| Sbjct 20709 TCAATGAAGGCGCCACGATCCGCAGCCATGGTGAT-AATGGTACGCTGGCTG---ATTTC 20654 Query 110530 CCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGA 110589 |||||| || || || |||||||||||| || |||| | || |||||||| || Sbjct 20653 CCAAACCGTCTTGTAAAGGGCCTTGATATCATCGGGAATATTAGGAATGTTCTGGATAGA 20594 Query 110590 ACCCCCCGCCTTCACCATGA---GATCCTTCATATCCTTGGACCAGAGACCAATCTTCTT 110646 ||| ||| | | || |||| ||| |||||| | | ||||| ||||| |||| Sbjct 20593 ACCACCCTC-TGCA--ATGATACGATTCTTCATGTTGTCCGACCAAAGACCCATCTCGAC 20537 Query 110647 GAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAG 110706 ||| || |||| || |||||| | || || || || || | | Sbjct 20536 GAGATCTTTGAGCAGCCATGGGTTGACGACTTGGAATTCCCCAGCAAGCACACGACGAGA 20477 Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 |||||| |||| |||||||| || ||||| || || ||| | ||||| | ||||| Sbjct 20476 GTAGATATTTGACGTGTATGGCTCGAAGCACTCGTTGAAACCGAGAATTTGAGATGTGGA 20417 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 || |||||||| || || | | ||| ||| |||| ||| | || |||||| | Sbjct 20416 AGCAGTTGGCATAGGAGCAACAAGAAGTGAGTTGCGAATACCGTGCTTCTTGATATCAGC 20357 Query 110827 CTTGAGAACATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATGTCAAACTGA 110884 |||||| |||||||| || || | | || | || |||| ||||||| |||| Sbjct 20356 CTTGAGCGAGTCCCAGTCCCAGA-GATCCGTAGGAGTGACGTTCC-ACATGTCGTACTGG 20299 Query 110885 AGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCC 110944 || | || ||||| | ||||| ||||| |||||| || | |||| ||| || Sbjct 20298 AGAATACCCTGGGAAACTGGAGAGCCCTCGTAGGTTTTGTATGTGCCTTCTTCTTGTGCA 20239 Query 110945 AATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 111004 | | ||| | || || || || || ||||| || ||||| || || | | Sbjct 20238 AGCTTGCAGGAAGAGGTCAAGGCGGCATGGTAAATGGTCTCGAAGATTTGAATGTTGAGC 20179 Query 111005 TCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAA-AATAAATACATCCGCGAGACC 111063 | ||| || || || || || | | || | | | || || |||| || ||||| Sbjct 20178 TTCTTTGCCTCGGGAGACTCGAAGG-GCAGGCGAAGAGCAAGGAAAGCATCAGCAAGACC 20120 Query 111064 TTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGG 111123 || ||||| | ||| | || | ||| || || || || |||||| Sbjct 20119 CTGTACACCAACACCGACGGGACGGTGACGGGAGTTGCTGTTGTATGCTTCGGGAACGGG 20060 Query 111124 ATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATG 111183 ||| || |||||||| ||| | || | ||| ||| || ||| || Sbjct 20059 ATAGTGGTTGACGTCAATGATCTTGTTCAAGTTGCGAATGACAGTCTGGACGACTTCGTG 20000 Query 111184 -AAGTTTTTCATAATCAAAAGTGC-GAGTCTCTTCATTGACATACTTTGGAAGGGCGATT 111241 || || || | ||||| | || | || | | | || | |||| | || || Sbjct 19999 CAACTTGTTGA-AATCATAGACGCCGCGT-TGAACGTCAACGAAGGTTGGCAAAGCCATG 19942 Query 111242 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAT 111301 |||||||| ||||||||||| |||||| | | |||||| | || || || || Sbjct 19941 GATGCCAAGTTGCAAACAGCAACCTCATCAGGCGCAGAGTACTCAATGATCTCAGTGCAC 19882 Query 111302 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCC 111361 | ||||| || ||| || ||||| ||||| || || ||||| |||||| ||||| Sbjct 19881 AGATTGGAGCTGCGAATGGTTCCCAAGTTCTTCTGATTGCTCTTGCGGTTGCAAGCATCT 19822 Query 111362 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417 ||||| |||||| | || | || ||||| ||||| | || ||||| || | ||| Sbjct 19821 TTGTAAAGCATGAAAGGGTTGCCAGTCTCGGTCTGGGCTTGAAGAATGGCGTACCA 19766 >seq1169 Length=73998 Score = 96.9 bits (106), Expect = 4e-15 Identities = 327/501 (65%), Gaps = 14/501 (3%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || ||||| |||||||| || ||||| ||||| || |||| ||||| ||||| Sbjct 48558 TAATCACCGACGCGCTTCTCGAAAAAGTTAGTCTTTCCGGCAAGAGATATGTTCTCCATG 48617 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTG-AGGAGACG 122489 ||||| || || || ||||| ||| || || | | | | | |||||| Sbjct 48618 AAGTCGAAGGGGTTGACGGCGTTGTAAACCT-TGACATTGCCAAGCGCAAGCAAGAGACG 48676 Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 122549 ||| | ||| |||| ||||||| | |||| ||||||||| |||| | | || Sbjct 48677 ATCAGCAACAAACTCGATGTACTGGCACATGAGGGTAGAGTTCATGCCGAGCAATCTGCA 48736 Query 122550 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 122609 || | ||| || | ||| | | |||||| | || ||||| | | ||||||| | Sbjct 48737 CGGTAATGCTTCGCTCAAGAATTCCTGCTCAATTTGTACTGCCTCGGTGATGATGGCGCG 48796 Query 122610 GATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGA--AGAGCTCCACGGCAAACTCC 122667 || | ||| | | || | || | || ||| |||| |||||| || Sbjct 48797 GACGGCTTCAGGCGAAGGCTTCTT--GTTGAGCTGTGAGAAGAGGAGGCAGGCAAAGTCG 48854 Query 122668 TGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGA 122727 ||| | ||||| || || || |||||||| || |||||| | || ||||||||| Sbjct 48855 GTGTGCATTCCCTCGTCGCGAGAGATAAGTTCGTTGGAGAAGGTCAAGCCGGGCATGAGA 48914 Query 122728 CCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 122786 || |||||||| | ||| | |||| ||| || | ||| ||||||||||||||| || Sbjct 48915 CCGCGCTTCTTGAGCCAGAAGATAGATGCA-AAGGCGCCGCTGAAGAAGATACCCTCGAC 48973 Query 122787 ACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATC---AAACCATTT 122843 | || || || | || || || |||| ||| || |||| || ||| || Sbjct 48974 AGCTGCGAATGCGACGAGACGCGATGCAAAGG---TAGAGTTGTCATCGCAAATCCACTT 49030 Query 122844 CATTGCCCATTTCGCCTTCTT 122864 || |||||| | |||||||| Sbjct 49031 CAGTGCCCAGTCGGCCTTCTT 49051 >seq529 Length=156848 Score = 93.3 bits (102), Expect = 5e-14 Identities = 223/332 (67%), Gaps = 8/332 (2%) Strand=Plus/Plus Query 182520 CCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACCATAGCGA 182579 |||||||| || |||||||| | ||| ||| ||||| ||||| | | ||||||| || Sbjct 101142 CCCTTGATATGGGAACCATCGTGATCCTGATCCGTCATGATCATCAAATGACCATATCGC 101201 Query 182580 AGTTCAGAAACATCTTGGTAGTCTTTTCCTTGT--TGAAGACCAAGGATCTTCTTGAGAT 182637 | | | || ||| || || ||||| || || || | || |||||||| | Sbjct 101202 AATCCTTTCGTGTCAGTGTACTCCTT--CTTGTGCTGCAGGCCCATGAACTTCTTGATGT 101259 Query 182638 CATTGAACTCCTGGTTTGATGTAAGCTGTGCCACCGAAGCGTCCCGAACATTCTTACATT 182697 | || ||| ||| | || || ||||| | |||||| || || || ||| Sbjct 101260 TCTGGATCTCAGCGTTGTTGGAAATTTGGGCCACGGTAGCGTCTCGCACGTTGAGCAATT 101319 Query 182698 TACCGCGAAGTGGGAACACACCGTAGTGATCACGACCAACGACAGAGAGACCCGCAACCG 182757 |||| ||||| ||||| |||||| |||| || || || | | || |||| | Sbjct 101320 TACCACGAAGCGGGAAAACACCGATCAAATCAGGATTGACCACCGCACGCCCAGCAAGAG 101379 Query 182758 CGAGGGTTTTCGCCGAATCACCCTCCGTGACAATGAGAGTACACTTTCCAGATTGTGC-- 182815 | || | || || |||||||| |||| |||||||||||| ||||||| || | Sbjct 101380 CAAGACCACTGGCAGAGTCACCCTCAGTGAGAATGAGAGTACA-TTTCCAG-CCGTCCTT 101437 Query 182816 CGTACCCGCCTTGTTCGCGTCATCCAACTTGG 182847 |||||||||||||| || || |||||||| Sbjct 101438 AGTACCCGCCTTGTTGGCATCCGTCAACTTGG 101469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628018811328000