Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148295.1_202016-10-31] 1,680 sequences; 40,142,277 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq196 136 5e-27 seq1169 107 2e-18 seq1337 87.8 2e-12 seq249 87.8 2e-12 >seq196 Length=40614 Score = 136 bits (150), Expect = 5e-27 Identities = 408/627 (65%), Gaps = 11/627 (2%) Strand=Plus/Minus Query 118938 TACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTA 118997 ||||| |||||| ||||| ||||| ||||| | || | || || || || Sbjct 19671 TACTTCTCGTAGAGAGCTTCGAACTCGTCACCGTAGATATCGGCAAGACCAGGGCACTCG 19612 Query 118998 TCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGG 119057 | ||||| | ||||| ||| | ||| || || || ||||||||||| ||||| || Sbjct 19611 TGAGGGCACATGAGAGTCCAGTCGCCATTCTGTTCGACGCGCTTCATGAACAGGTCGGGA 19552 Query 119058 ATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGC 119117 ||||| | || |||| ||||| ||| || |||||||| | || || || | | Sbjct 19551 ATCCACAAGGCATAGAAAAGATCACGAGCACGCGCTTCTTCTTTGCCGTGGTTCTTTCTC 19492 Query 119118 AACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCC 119177 | || || ||| | || ||| |||||||| || || ||||| | |||| || || Sbjct 19491 AGATCTAACCAGTTGAAGACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAATGCACC- 19433 Query 119178 TTACGACGA------CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGC 119231 | |||| ||| | || | || || | ||||| |||| ||| ||||| ||| Sbjct 19432 --AGGACGCTTGTTGCCACCTTGATCAACGTAGCGAGCAGTCGCGTCAAAGACACGGAGC 19375 Query 119232 ATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTG 119291 || |||| | ||| | ||| ||| ||||| || | ||| || | |||||| | Sbjct 19374 ATAGGAACAAGACCGTTCGATGTGCCGTTTGTTCCTCCAATGTATGATCCAGTGGCTCGG 19315 Query 119292 ACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTG 119351 | || |||| | || ||||| || || |||||| || || || | || Sbjct 19314 ATGCGATGTATGTTAAGGCCGATACCACCAGCGGTCTTTGAAATCATAGCACAAGTCTTG 19255 Query 119352 AGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGAC 119411 || || ||||||| || ||||| ||| |||| | | ||||||||||| ||| Sbjct 19254 AGGGTGTCGTAGATACCCTCGATGCTGTCCTCCTTCGTGTCAATGAGGAAGCAAGACGAG 19195 Query 119412 ATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT 119471 | ||| || ||||| || |||||||| || || || | ||||| |||| || | Sbjct 19194 AGTTGCGGTTGAGGTGTGCCTGCGTTGAAAAGTGTAGGGGAGGCGTGCGTGAA-GTATTT 19136 Query 119472 -TGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGAT 119530 | ||||| | || ||| |||| | | | | |||||| || |||||||| |||| Sbjct 19135 GTTAGACATGTAGTTGTATGTCTGTATGGCAGATTCAATGTCCTCTCCGTGAATGCCGAC 19076 Query 119531 CGAGACCCGCATAAACATGTATTgggg 119557 | || ||||| | ||| | ||| || Sbjct 19075 TGCCACACGCATGATCATATGTTGTGG 19049 Score = 93.3 bits (102), Expect = 5e-14 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 118750 CAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTT 118809 ||| |||||| || || || ||||||| || || || |||||| ||||||||||| | Sbjct 19907 CAGAGTACTCAATGATCTCAGTGCACAGATTGGAGCTGCGAATGGTTCCCAAGTTCTTCT 19848 Query 118810 GATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTT 118869 |||| ||| ||| || ||||| |||||||||||| | || | || ||||| || | Sbjct 19847 GATTGCTCTTGCGGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTGCCAGTCTCGGTCT 19788 Query 118870 GGGACTTG-AGAATAGCCTTCCAGA 118893 ||| |||| ||||| || | ||||| Sbjct 19787 GGG-CTTGAAGAATGGCGTACCAGA 19764 >seq1169 Length=73998 Score = 107 bits (118), Expect = 2e-18 Identities = 162/227 (71%), Gaps = 10/227 (4%) Strand=Plus/Plus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || ||| | |||||||| || ||||| ||||| || |||||| || || Sbjct 48845 GGCAAAGTCGGTGTGCATTCCCTCGTCGCGAGAGATAAGTTCGTTGGAGAAGGTCAAGCC 48904 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 ||||||||||| |||||||| | |||||| || | ||| | ||| ||||||||| Sbjct 48905 GGGCATGAGACCGCGCTTCTTGAGCCAGAAGATAGATGCAAAGGCGCCGCTGAAGAAGAT 48964 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG-AGCGGGACTTTGT-ATC- 130191 ||||| ||| ||||| || | ||||||| ||||||| || | |||| ||| Sbjct 48965 ACCCTCGACAGCTGCGAATGCGACGAGACGCGATGCAAAGGTAGAG-----TTGTCATCG 49019 Query 130192 --AAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGAC 130236 || |||||||| ||||| | ||||| || ||| || ||||| Sbjct 49020 CAAATCCACTTCAGTGCCCAGTCGGCCTTCTTGCGGATGCAGGGGAC 49066 >seq1337 Length=120122 Score = 87.8 bits (96), Expect = 2e-12 Identities = 164/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 14234 TTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGT-TGATTTTCACGGGCAAC 14292 || || | |||||| |||||||| ||||||| ||| || ||| || | ||| | || Sbjct 109291 TTCCCAATGGCGTCGATTTCATCAATGAAAATGATGCAAGGTGTGTTCTTC-CTCGCGGT 109349 Query 14293 TTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGC 14352 | || | |||||| || | | |||||||||||||||||||||||| || | | Sbjct 109350 GGCGAACAGATCTCGAACACGAGATGGACCGACACCCACAAACATCTCCACGAACTCAGA 109409 Query 14353 GGCG-GAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGG 14411 | || ||| | || ||| || || |||||| || || | ||| |||||| || | Sbjct 109410 GCCGCTCACACT-GAAGAATGGAACACCAGATTCGCCAGCTGTTGCTTTGGCGAGCAGCG 109468 Query 14412 TCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCA 14467 |||| || || || || ||| | |||| |||||| || || ||| | |||||| Sbjct 109469 TCTTGCCAGTTCCAGGAGGCCCAGAAAGAATGGCACCGCGAGGAATCTTCGCACCA 109524 >seq249 Length=124404 Score = 87.8 bits (96), Expect = 2e-12 Identities = 164/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 14234 TTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGT-TGATTTTCACGGGCAAC 14292 || || | |||||| |||||||| ||||||| ||| || ||| || | ||| | || Sbjct 10340 TTCCCAATGGCGTCGATTTCATCAATGAAAATGATGCAAGGTGTGTTCTTC-CTCGCGGT 10282 Query 14293 TTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGC 14352 | || | |||||| || | | |||||||||||||||||||||||| || | | Sbjct 10281 GGCGAACAGATCTCGAACACGAGATGGACCGACACCCACAAACATCTCCACGAACTCAGA 10222 Query 14353 GGCG-GAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGG 14411 | || ||| | || ||| || || |||||| || || | ||| |||||| || | Sbjct 10221 GCCGCTCACACT-GAAGAATGGAACACCAGATTCGCCAGCTGTTGCTTTGGCGAGCAGCG 10163 Query 14412 TCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCA 14467 |||| || || || || ||| | |||| |||||| || || ||| | |||||| Sbjct 10162 TCTTGCCAGTTCCAGGAGGCCCAGAAAGAATGGCACCGCGAGGAATCTTCGCACCA 10107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618422212860800