Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148295.1_202016-10-31] 1,680 sequences; 40,142,277 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq196 271 9e-68 seq1169 131 2e-25 seq1337 87.8 2e-12 seq249 87.8 2e-12 >seq196 Length=40614 Score = 271 bits (300), Expect = 9e-68 Identities = 1148/1798 (64%), Gaps = 85/1798 (5%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 ||||| | ||| ||||||| ||||| |||| ||||| || || |||||||| |||| | Sbjct 19049 CCACAACATATGATCATGCGTGTGGCAGTCGGCATTCACGGAGAGGACATTGAATCTGCC 19108 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | |||||||| || | ||||| | | || |||| ||||| | || || || || Sbjct 19109 ATACAGACATACAACTACATGTCTAACAAATAC-TTCACGCACGCCTCCCCTACACTTTT 19167 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| || || ||||| ||| ||| | || ||||||||| || | || |||||||| Sbjct 19168 CAACGCAGGCACACCTCAACCGCAACTCTCGTCTTGCTTCCTCATTGACACGAAGGAGGA 19227 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 | ||| | |||||||| | || || | | ||||| || |||||| ||||| Sbjct 19228 CAGCATCGAGGGTATCTACGACACCCTCAAGACTTGTGCTATGATTTCAAAGACCGCTGG 19287 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 104520 ||||| || | |||| ||| | |||||| | ||| ||| | || ||||| Sbjct 19288 TGGTATCGGCCTTAACATACATCGCATCCGAGCCACTGGATCATACATTGGAGGAACAAA 19347 Query 104521 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580 || ||| | ||| || |||| ||||| || || ||| |||| || || ||||| || Sbjct 19348 CGGCACATCGAACGGTCTTGTTCCTATGCTCCGTGTCTTTGACGCGACTGCTCGCTACGT 19407 Query 104581 AAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCA 104634 |||||| ||| ||||| | || |||| |||| || ||||||||||| Sbjct 19408 TGATCAAGGTGGCAACAAGCGTCCTGGTGCAT---TCGCCATCTACCTCGAGCCATGGCA 19464 Query 104635 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTG 104694 ||| ||| || | | | | || || | ||||| || | || || ||||| || Sbjct 19465 CGCCGATGTCTTCAACTGGTTAGATCTGAGAAAGAACCACGGCAAAGAAGAAGCGCG-TG 19523 Query 104695 C-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753 | || ||||| |||| || | |||||||| || || ||||||||| | || || ||| Sbjct 19524 CTCGTGATCTTTTCTATGCCTTGTGGATTCCCGACCTGTTCATGAAGCGCGTCGAACAGA 19583 Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTG 104813 |||| | ||| ||||| | || || || || |||||||| ||||| | |||| Sbjct 19584 ATGGCGACTGGACTCTCATGTGCCCTCACGAGTGCCCTGGTCTTGCCGATATCTACGGTG 19643 Query 104814 AGGAGTTTGAA---------------------GCC-------CTTTAC----------AC 104835 | ||||| ||| ||| ||| || || Sbjct 19644 ACGAGTTCGAAGCTCTCTACGAGAAGTAAGTTGCCACAAGTGCTTGACTACCGCCAATAC 19703 Query 104836 AAA----------GTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCCGATG 104885 || ||||||| ||||||| || | || || | | || | Sbjct 19704 TAACCGCTCCCAGGTACGAGAAAGAAGGCCGTGGCCGTGAAACTATCCGTGCCCAAAAGC 19763 Query 104886 TGTGGAAAGCTATTCT-CAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAA 104944 | ||| | || ||||| |||| | || ||||||||||| | || | ||||||||||||| Sbjct 19764 TCTGGTACGCCATTCTTCAAGCC-CAGACCGAGACTGGCAACCCTTTCATGCTTTACAAA 19822 Query 104945 GACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTC 105004 || || || |||| ||||| ||||| ||||| ||||| || || |||||||| Sbjct 19823 GATGCTTGCAACCGCAAGAGCAATCAGAAGAACTTGGGAACCATTCGCAGCTCCAATCTG 19882 Query 105005 TGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCA 105064 || || || ||| | || | | | |||||| ||||| || ||| | ||||| Sbjct 19883 TGCACTGAGATCATTGAGTACTCTGCGCCTGATGAGGTTGCTGTTTGCAACTTGGCATCC 19942 Query 105065 ATCGCTCTCCCCAAGTATGTGGA--TCCAGAGACAAAGACATTTGATTATGAAAAACTCC 105122 || ||| | || | | || || | || | | | | | ||||| | || | | Sbjct 19943 ATGGCTTTGCCAACCTTCGTTGACGTTCAACG-CGGCGTC-TATGATTTCAACAAGTTGC 20000 Query 105123 ACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACC 105182 ||||||| | ||||||| ||| | |||| | ||||| || || | Sbjct 20001 ACGAAGTCGTCCAGACTGTCATTCGCAACTTGAACAAGATCATTGACGTCAACCACTATC 20060 Query 105183 CCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGG 105242 ||||| || || || | |||||||| | ||| | ||||| |||| Sbjct 20061 CCGTTCCCGAAGCATACAACAGCAACTCCCGTCACCGTCCCGTCGGTGTTGGTGTACAGG 20120 Query 105243 GTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAA 105302 |||| || |||| ||| || | ||||| | || || || ||| || ||| | Sbjct 20121 GTCTTGCTGATGCTTTCCTTGCTCTTCGCCTGCCCTTCGAGTCTCCCGAGGCAAAGAAGC 20180 Query 105303 TCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAG--AGTT 105360 |||| | || || |||||||| || || ||||| ||||| | | | | || | Sbjct 20181 TCAACATTCAAATCTTCGAGACCATTTACCATGCCGC-CTTGAC-CTCTTCCTGCAAGCT 20238 Query 105361 GGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCT 105420 ||| | | || || |||| |||||| ||||| ||||||| ||| || || | || Sbjct 20239 TGCACAAGAAGAAGGCACATACAAAACCTACGAGGGCTCTCCAGTTTCCCAGGGTATTCT 20298 Query 105421 TCAATTTGATATGTGGGAAGGTGAGACCAA-GCTTCACTACGACTGGGAAGCTCTCAAGG 105479 || | || |||||| || || | || | | || || |||||||| | ||||||| Sbjct 20299 CCAGTACGACATGTGG-AACGTCACTCCTACGGATCTCTGGGACTGGGACTCGCTCAAGG 20357 Query 105480 AACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCT 105539 |||||| || | ||| |||| ||| || || | ||||| |||||||| || | Sbjct 20358 CTGATATCAAGAAGCACGGTATTCGCAACTCACTTCTTGTTGCTCCTATGCCAACTGCTT 20417 Query 105540 CCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTA-T 105598 |||| | ||||| | ||| || || ||||| || || |||||| | || ||||| | Sbjct 20418 CCACATCTCAAATTCTCGGTTTCAACGAGTGCTTCGAGCCATACACGTCAAATATCTACT 20477 Query 105599 CTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCAT--CTCGTGGATGACC 105656 || | | || || || || || | |||||| ||| || | | || | Sbjct 20478 CTC-GTCGTGTGCTTGCTGGGGAATTCCAAGTCGTCAACC--CATGGCTGCTCAAAGATC 20534 Query 105657 TCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTGAAAGCGGGTGGTT 105716 || ||||| ||||| ||||| | | |||||| ||| || | || |||||||| Sbjct 20535 TCGTCGAGATGGGTCTTTGGTCGGACAACATGAAGAATCGTATCATTGCAGAGGGTGGTT 20594 Query 105717 CCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTGTACCGCACAGTTTGGG 105776 | || || || ||| ||||||| |||| || ||| | ||| || ||||||| Sbjct 20595 CTATCCAGAACATTCCTAATATTCCCGATGATATCAAGGCCCTTTACAAGACGGTTTGGG 20654 Query 105777 AAATCAAGATGAAGGATGTCATTGACA---TGGCCGCAGATCGTGGTCGCTTCATTGATC 105833 |||||| || | |||| || |||| || |||||||| ||||||||||| Sbjct 20655 AAATCAGCC---AGCGTACCATTATCACCATGGCTGCGGATCGTGGCGCCTTCATTGATC 20711 Query 105834 AAAGTCAAAGTATGAATCTCTTCATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGC 105893 || ||| || |||| | |||| || || || ||| |||| | |||| |||| Sbjct 20712 AATCTCAGAGCTTGAACATTCACATGAAAGAGCCGACCATGGGCAAGATTACTTCCATGC 20771 Query 105894 ACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACCTCCGATCTAAGGC 105951 || | ||||||||| ||||||||| || || ||||| ||||||||| | | ||| Sbjct 20772 ACTTTGCTGGTTGGAAGATGGGTCTCAAGACTGGAATGTACTACCTCCGAACCATGGC 20829 >seq1169 Length=73998 Score = 131 bits (144), Expect = 2e-25 Identities = 167/226 (74%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAGTC 94790 ||| || || || | ||||| || || ||||| |||||||| || ||| || || Sbjct 49067 AGTCCCCTGCATCCGCAAGAAGGCCGACTGGGCACTGAAGTGGATTTGCGATGACAACTC 49008 Query 94791 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850 | ||||||| ||| ||| ||||||| || ||| ||||||||||||||| || Sbjct 49007 ---TACCTTTGCATCGCGTCTCGTCGCATTCGCAGCTGTCGAGGGTATCTTCTTCAGCGG 48951 Query 94851 TTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 94909 |||| ||| |||| | |||||||||||||| ||||||||||| || | ||||| Sbjct 48950 CGCCTT-TGCATCTATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCTTGACCTTCT 48892 Query 94910 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||||| ||||||||||| ||||||||| | ||| || ||||| Sbjct 48891 CCAACGAACTTATCTCTCGCGACGAGGGAATGCACACCGACTTTGC 48846 >seq1337 Length=120122 Score = 87.8 bits (96), Expect = 2e-12 Identities = 244/367 (66%), Gaps = 23/367 (6%) Strand=Plus/Plus Query 9575 TTCGTCGCGGCGATGACAACAATACCTGTTTCAT--TATCAAAACCATCCATCTCTGTCA 9632 ||||| | || || || |||| |||||| | | | | ||||||||||| || |||| Sbjct 109168 TTCGTACCCGCAATAACCACAA--CCTGTTCCGTGGTGTTGAAACCATCCATTTCAGTCA 109225 Query 9633 AAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTT 9692 | ||||| | || ||||||||||||||| | ||| ||| || || Sbjct 109226 GGATCTGGTTGAGCGTGCTTTCCCGTTCATCATTTCC------ACCGCCAAAGTTGTTTT 109279 Query 9693 GC--------TTTCCCAC-GGCATCAATCTCATCAATGAAGACGATGCATGGT-TGATTT 9742 | ||||||| ||| || || ||||||||||| | |||||| ||| || | | Sbjct 109280 TCGATCTCGATTTCCCAATGGCGTCGATTTCATCAATGAAAATGATGCAAGGTGTGTTCT 109339 Query 9743 TCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCC 9802 || | ||| | || ||||| || ||||| | || ||||| |||||||||||| Sbjct 109340 TC-CTCGCGGTGGCGAACAGATCTCGAACACGAGATGGACCGACACCCACAAACATCTCC 109398 Query 9803 ACAAAGTTTGCGGCG-GAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCG 9861 || || | | | || ||| | || ||| || ||| |||||| || || | ||| Sbjct 109399 ACGAACTCAGAGCCGCTCACACT-GAAGAATGGAACACCAGATTCGCCAGCTGTTGCTTT 109457 Query 9862 GGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTT 9921 |||||| || ||||| || || || || || | || | |||||| || |||||||| Sbjct 109458 GGCGAGCAGCGTCTTGCCAGTTCCAGGAGGCCCAGAAAGAATGGCACCGCGAGGAATCTT 109517 Query 9922 GGCGCCA 9928 || ||| Sbjct 109518 CGCACCA 109524 >seq249 Length=124404 Score = 87.8 bits (96), Expect = 2e-12 Identities = 244/367 (66%), Gaps = 23/367 (6%) Strand=Plus/Minus Query 9575 TTCGTCGCGGCGATGACAACAATACCTGTTTCAT--TATCAAAACCATCCATCTCTGTCA 9632 ||||| | || || || |||| |||||| | | | | ||||||||||| || |||| Sbjct 10463 TTCGTACCCGCAATAACCACAA--CCTGTTCCGTGGTGTTGAAACCATCCATTTCAGTCA 10406 Query 9633 AAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTT 9692 | ||||| | || ||||||||||||||| | ||| ||| || || Sbjct 10405 GGATCTGGTTGAGCGTGCTTTCCCGTTCATCATTTCC------ACCGCCAAAGTTGTTTT 10352 Query 9693 GC--------TTTCCCAC-GGCATCAATCTCATCAATGAAGACGATGCATGGT-TGATTT 9742 | ||||||| ||| || || ||||||||||| | |||||| ||| || | | Sbjct 10351 TCGATCTCGATTTCCCAATGGCGTCGATTTCATCAATGAAAATGATGCAAGGTGTGTTCT 10292 Query 9743 TCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCC 9802 || | ||| | || ||||| || ||||| | || ||||| |||||||||||| Sbjct 10291 TC-CTCGCGGTGGCGAACAGATCTCGAACACGAGATGGACCGACACCCACAAACATCTCC 10233 Query 9803 ACAAAGTTTGCGGCG-GAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCG 9861 || || | | | || ||| | || ||| || ||| |||||| || || | ||| Sbjct 10232 ACGAACTCAGAGCCGCTCACACT-GAAGAATGGAACACCAGATTCGCCAGCTGTTGCTTT 10174 Query 9862 GGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTT 9921 |||||| || ||||| || || || || || | || | |||||| || |||||||| Sbjct 10173 GGCGAGCAGCGTCTTGCCAGTTCCAGGAGGCCCAGAAAGAATGGCACCGCGAGGAATCTT 10114 Query 9922 GGCGCCA 9928 || ||| Sbjct 10113 CGCACCA 10107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583248551523200