Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148295.1_202016-10-31] 1,680 sequences; 40,142,277 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq836 158 4e-33 seq1579 98.7 3e-15 seq313 95.1 4e-14 seq1455 91.5 4e-13 >seq836 Length=28874 Score = 158 bits (174), Expect = 4e-33 Identities = 490/746 (66%), Gaps = 22/746 (3%) Strand=Plus/Plus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 ||||| || |||||||| ||||| || || || || || | | | | | |||| ||| Sbjct 22934 GCTATCGGTATCGATTTGGGTACCACGTACTCCTGCGTGGGTATCTTCAGAGATGACCGT 22993 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 | ||||| ||||| || || || |||||| | ||||| ||||| | |||||| || || Sbjct 22994 ATCGAAATCATTGCCAACGACCAGGGTAACCGCACAACACCATCCTTCGTTGCCTTCACA 23053 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || || ||| | |||||||| || || || || || | || || || || Sbjct 23054 GATACGGAACGTCTCATTGGTGACTCGGCGAAGAACCAGGTCGCCATGAACCCCGTCAAC 23113 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT-----TTCTGACAAATCTACA 349432 || | || ||||| ||||| || || ||| | |||||| | |||| || Sbjct 23114 ACTATCTTCGATGCCAAGCGCCTCATCGGTCGCAAGTTTGCCGATGCTGAGG--TC---- 23167 Query 349433 CAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGA-CGGTGATAAACCAAT 349491 || ||||| | || || || || || | | || | | ||| ||| || || | Sbjct 23168 CAGGCTGATATGAAGCACTTCCCCTTCAAGATCGT-CGACAAGCTCGGC---AAGCCTGT 23223 Query 349492 TATTGAGGTTGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAA 349550 | | || |||| | || || || || || || || ||| || || || || || | Sbjct 23224 TGTCCAGATTGAGTTCAAGGGCGAGACCAAGACT-TTCACACCAGAGGAGATCTCCTCCA 23282 Query 349551 TGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATG 349610 || | || || ||| || | ||||| ||||| | || | || || | | | Sbjct 23283 TGATCTTGACCAAGATGCGCGAGACCGCTGAGTCATATCTCGGAGGTACCGTCAACAACG 23342 Query 349611 CTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTG 349670 |||| | || || ||||| || || || || | ||||| || ||||| || |||| Sbjct 23343 CTGTCGTCACAGTCCCAGCATACTTCAACGACTCGCAGCGACAAGCTACAAAGGACGCTG 23402 Query 349671 GCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTG 349730 | |||||| || | || || || | || || || |||||||| || || || || | Sbjct 23403 GTCTCATTGCTGGCCTCAACGTCCTCCGTATCATCAACGAACCCACAGCCGCTGCCATCG 23462 Query 349731 CATATGGGCTTGATAAAATGAGTGACCAA-GaaaaaaaTATTCTTATTTTTGATTTAGGT 349789 | ||||| ||||| || | | | || || || | ||||| || ||| | ||| Sbjct 23463 CTTATGGTCTTGACAAGAAG-GCCACTGGTGAGCGTAACGTCCTTATCTTCGATCTCGGT 23521 Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCA 349849 || || || || ||||| || || | || |||| ||||| ||||| || || || | Sbjct 23522 GGAGGAACCTTCGATGTGTCTCTTTTGACCATTGAGGAGGGTATTTTCGAGGTCAAGTCC 23581 Query 349850 ACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTT 349909 ||||||||||| || || | || || ||||| || || || ||||||||| || || Sbjct 23582 ACTGCTGGTGACACCCACTTGGGAGGTGAAGACTTCGACAACCGTCTCGTTAACCACTTC 23641 Query 349910 GTTAAAGAATTTAAGCGTCAAGCTAA 349935 || || ||||| ||||| |||| ||| Sbjct 23642 GTCAACGAATTCAAGCG-CAAGGTAA 23666 >seq1579 Length=49950 Score = 98.7 bits (108), Expect = 3e-15 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || ||||| ||||| || ||||| || || || || | Sbjct 29460 TTTGCATACCACCACGGAGGCGGAGGACAAGGTGAAGTGTGGACTCCTTCTGGATGTTGT 29519 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | ||||| ||||| || || || || || || ||||| | || ||||| | Sbjct 29520 AGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGT 29579 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || ||||| || || || ||||| || | || || || || || | || | Sbjct 29580 CTGGTGGGATTCCCTCCTTGTCTTGAATCTTGGTCTTGACGTTGTCGATGGTGTCGCTAG 29639 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGT 140719 ||||| ||||| || | |||||||| || | ||| Sbjct 29640 ACTCAACCTCAAGGGTGATCGTCTTTCCTGTCACTGT 29676 >seq313 Length=52749 Score = 95.1 bits (104), Expect = 4e-14 Identities = 98/128 (77%), Gaps = 3/128 (2%) Strand=Plus/Plus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || || |||||| | || |||||| || || | ||||| || || |||||||| ||| Sbjct 28489 CGAGGAACACCAAGCGTCACATTC---TTTGACGAGACACCGGCGAAATGGAAAGTGTTA 28545 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | ||| || | ||| |||||||| ||||| ||||||| |||||||||||| || Sbjct 28546 AGCGTCATTTGTGTTGCGGGTTCACCAATCGACTGTGCTGCAAGAACGCCAACCATGTCA 28605 Query 377578 CCAGGATT 377585 || || || Sbjct 28606 CCCGGGTT 28613 >seq1455 Length=38904 Score = 91.5 bits (100), Expect = 4e-13 Identities = 138/195 (71%), Gaps = 1/195 (1%) Strand=Plus/Plus Query 140535 TGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGT 140594 |||| ||| | | | ||||| || || || || || || || ||||| || | ||| Sbjct 28519 TGAAAAGTCG-CACCTTTTGGATGTTGTAGTCGCTCAAGGTACGTCCATCCTCCAATTGC 28577 Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 |||||||||||||||| || || || || || |||||||| || || || || || || Sbjct 28578 TTTCCAGCAAAGATTAATCGCTGTTGGTCTGGCGGAATTCCCTCCTTGTCTTGGATCTTG 28637 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 | || ||||| || || | ||||| | || || ||||| || | ||||| || || Sbjct 28638 GTCTTGACATTGTCGATAGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTG 28697 Query 140715 AGTGTTTTTACAAAA 140729 || ||||| || ||| Sbjct 28698 AGGGTTTTGACGAAA 28712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515221784149040