Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148295.1_202016-10-31] 1,680 sequences; 40,142,277 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq196 174 2e-38 seq1169 91.5 2e-13 >seq196 Length=40614 Score = 174 bits (192), Expect = 2e-38 Identities = 402/598 (67%), Gaps = 16/598 (3%) Strand=Plus/Plus Query 19116 TCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGA----GACA 19171 ||||||| || || |||||||| || || || ||| | || || || | |||| Sbjct 19062 TCATGCGTGTGGCAGTCGGCATTCACGGAGAGGACATT----GAATCTGCCATACAGACA 19117 Query 19172 TACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGT 19231 ||| || ||| | || | |||||||||||| | || || ||||||||||| || Sbjct 19118 TACAACTACATGTCTAACAAATACTTCACGCACGCCTCCCCTACACTTTTCAACGCAGGC 19177 Query 19232 ACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAG 19291 || | ||||| | ||| || ||||| | | | |||||| |||||||| ||| Sbjct 19178 ACACCTCAACCGCAACTCTCGTCTTGCTTCCTCATTGACACGAAGGAGGACAGCATCGAG 19237 Query 19292 GGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGG 19351 || |||||||| || |||||| || || || || ||| | || |||||||| Sbjct 19238 GGTATCTACGACACCCTCAAGACTTGTGCTATGATTTCAAAGACCGCTGGTGGTATCGGC 19297 Query 19352 ATCCAC-TGC-TCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAG 19409 | || | | ||| || ||| | | ||| || || || || ||||| | Sbjct 19298 CTTAACATACATCGCAT--CCGAGCCACTGGATCATACATTGGAGGAACAAACGGCACAT 19355 Query 19410 CCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGG 19469 | ||||| | || || |||||||| ||||| || || || | ||||| | || | Sbjct 19356 CGAACGGTCTTGTTCCTATGCTCCGTGTCTTTGACGCGACTGCTCGCTACGTTGATCAAG 19415 Query 19470 GGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCA 19529 | ||| ||| || || | ||||||||||||||||||||||||||||| || ||| Sbjct 19416 GTGGCAACAAGCGTCCTGGTGCATTCGCCATCTACCTCGAGCCATGGCACGCCGATGTCT 19475 Query 19530 TGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGC-TG-TCGCGACCT 19587 | | | | || ||| | |||||| || | || ||| |||| || ||| || || Sbjct 19476 TCAACTGGTTAGATCTGAGAAAGAACCACGGCAA--AGAAGAAGCGCGTGCTCGTGATCT 19533 Query 19588 CTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATG 19647 ||| |||||||||||||| ||||| |||||| || || || || | | || || Sbjct 19534 TTTCTATGCCTTGTGGATTCCCGACCTGTTCATGAAGCGCGTCGAACAGAATGGCGACTG 19593 Query 19648 GCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTC 19705 | || |||||||| ||||| |||||||| || |||| ||||||| || | |||| Sbjct 19594 GACTCTCATGTGCCCTCACGAGTGCCCTGGTCTTGCCGATATCTACGGTGACGAGTTC 19651 Score = 163 bits (180), Expect = 3e-35 Identities = 899/1430 (63%), Gaps = 90/1430 (6%) Strand=Plus/Minus Query 78534 GTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGA 78593 |||||| || | |||||| |||||||| ||||||| || | || || | || || Sbjct 20476 GTAGATATTTGACGTGTATGGCTCGAAGCACTCGTTGAAACCGAGAATTTGAGATGTGGA 20417 Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGAC 78653 || || ||||| || || || || || || || |||| ||| ||| ||||||| || | Sbjct 20416 AGCAGTTGGCATAGGAGCAACAAGAAGTGAGTTGCGAATACCGTGCTTCTTGATATCAGC 20357 Query 78654 CTTTAGG------CCGTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAG 78707 ||| || | |||||| | || | | | || ||||||||| || || Sbjct 20356 CTTGAGCGAGTCCCAGTCCCAGAGATCCGTAGGAGTGACGTTCCACATGTCGTACTGGAG 20297 Query 78708 GATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTG-GCGA 78766 ||||||| ||| | || || |||| | | || | ||| | | ||| || |||| || | Sbjct 20296 AATACCCTGGGAAACTGGAGAGCCCTCGTAGGTTTTGTATG-TGCCTTCTTCTTGTGCAA 20238 Query 78767 GTTCGCATGACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCT 78826 | | ||| || | || ||| || ||||| | | ||||||||| ||||||||| Sbjct 20237 GCTTGCAGGAAGAGGTCAAGGCGGCATGGTAAATGGTCTCGAAGATTTGAATGTTGAGCT 20178 Query 78827 CGCGCGCCTTGGTCTCGTCGAACGAAAGGCC--GAGCATCATGAAGACATCGGCCAGGCC 78884 |||| || ||||| | |||| ||||| | ||| |||| || || || Sbjct 20177 TCTTTGCCTCGGGAGACTCGAAGGGCAGGCGAAGAGCA--AGGAAAGCATCAGCAAGACC 20120 Query 78885 CTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGT--C 78942 ||| || || | | ||| || ||||| || |||||| || | || |||| | Sbjct 20119 CTGTACACCAACACCGACGGGACGGTGACGGGAGTTGCTGTT---GTATGCTTCGGGAAC 20063 Query 78943 GGG-TAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTC 79001 ||| || ||| || |||| ||||| ||| || |||| | | || || Sbjct 20062 GGGATAGTGGTTGACGTCAATGATCTTGTTCAAGTTGCGAATGACAGTCTGGACGACTTC 20003 Query 79002 GTACAATTTGGCGAAATCAAAATGATTTC-CTTTGA---TGAAAGTCGGTAGGCACAGC- 79056 || ||| ||| ||||||| | || | | |||| | || | ||| |||| ||| Sbjct 20002 GTGCAACTTGTTGAAATCATA--GACGCCGCGTTGAACGTCAACGAAGGTTGGCAAAGCC 19945 Query 79057 ---GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTG 79113 ||||||| |||||| || || ||| || || ||| ||| ||||| || ||| Sbjct 19944 ATGGATGCCAAGTTGCAAACAGCAACCTCATCAGGCGCAGAGTACTCAATGATCTCAGTG 19885 Query 79114 CACAAATTAGA----CGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACA 79169 |||| ||| || ||| ||||| || | ||||||||| |||||||| ||| || Sbjct 19884 CACAGATTGGAGCTGCGA----ATGGTTCCCAAGTTCTTCTGATTGCTCTTGCGGTTGCA 19829 Query 79170 GGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGA-GAACGCCGT 79228 || || ||||| |||| | || | || ||||| ||| ||||| ||| | ||| Sbjct 19828 AGCATCTTTGTAAAGCATGAAAGGGTTGCCAGTCTCGGTCTGGG-CTTGAAGAATGGCGT 19770 Query 79229 CCCAGATGTCCCGGGCCCGGACAA--------------CCTTCTT----GTACC------ 79264 ||||| | |||| |||| | ||||||| ||||| Sbjct 19769 ACCAGAGCTTTTGGGCACGGATAGTTTCACGGCCACGGCCTTCTTTCTCGTACCTGGGAG 19710 Query 79265 -----------------------GACCCTGTG-CGACGTACGTCCGGTACAACTCGTTGA 79300 | | |||| | || ||| || ||| | | | || Sbjct 19709 CGGTTAGTATTGGCGGTAGTCAAGCACTTGTGGCAACTTACTTCTCGTAGAGAGCTTCGA 19650 Query 79301 AAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGT 79360 | | || || |||| ||||| || || ||||||||||| |||||||| || ||||| Sbjct 19649 ACTCGTCACCGTAGATATCGGCAAGACCAGGGCACTCGTGAGGGCACATGAGAGTCCAGT 19590 Query 79361 CCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGT 79420 | | | || || || || |||||| ||||| || ||||||| ||| ||| || | Sbjct 19589 CGCCATTCTGTTCGACGCGCTTCATGAACAGGTCGGGAATCCACAAGGCATAGAAAAGAT 19530 Query 79421 CGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGT 79480 | || |||| || || | ||| |||||| | ||| || | ||| | || | Sbjct 19529 CACGAGCACGCGCTTCTTCTTTGCCGTGGTTCTTTCTCAGATCTAACCAGTTGAAGACAT 19470 Query 79481 CGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGT 79540 |||||||||| ||||| || ||||||||||| | ||| |||||| ||| || || | Sbjct 19469 CGGCGTGCCATGGCTCGAGGTAGATGGCGAATGCACCAGGACGCTTGTTGCCACCTTGAT 19410 Query 79541 TGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGC 79600 ||||| || || || || || || |||||||| || || | |||| | || Sbjct 19409 CAACGTAGCGAGCAGTCGCGTCAAAGACACGGAGCATAGGAACAAGACCGTTCGATGTGC 19350 Query 79601 CGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGA-GCA-GTGGATTCCGAT 79658 |||| || || || || || | || || ||| ||| | | || | ||||| Sbjct 19349 CGTTTGTTCCTCCAATGTATGATCCAGTGGCTCGGATG--CGATGTATGTTAAGGCCGAT 19292 Query 79659 GCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGAT 79718 || || | ||| || || || || |||||| || |||||||| |||||||| Sbjct 19291 ACCACCAGCGGTCTTTGAAATCATAGCACAAGTCTTGAGGGTGTCGTAGATACCCTCGAT 19232 Query 79719 CGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGC 79778 ||| |||||| | | | |||||||| ||| | || || | || || || Sbjct 19231 GCTGTCCTCCTTCGTGTCAATGAGGAAGCAAGACGAGAGTTGCGGTTGAGGTGTGCCTGC 19172 Query 79779 GTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTC 79838 |||||| || || || | |||||||||||| | || | ||| | ||| |||| Sbjct 19171 GTTGAAAAGTGTAGGGGAGGCGTGCGTGAAGTATTTGTTAGACATGTAGTTGTATGTCTG 19112 Query 79839 CTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGA 79888 || | | ||| || ||||| |||||||| || || ||||||| Sbjct 19111 TATGGCAGATTCAATGTCCTCTCCGTGAATGCCGACTGCCACACGCATGA 19062 >seq1169 Length=73998 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 |||||| |||||| | || || ||| || || || ||||||||| ||| | || Sbjct 49003 TTTGCATCGCGTCTCGTCGCATTCGCAGCTGTCGAGGGTATCTTCTTCAGCGGCGCCTTT 48944 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 |||| ||||||||||| ||||| || |||||||| ||| ||| ||||||||||| Sbjct 48943 GCATCTATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCTTGACCTTCTCCAACGAA 48884 Query 60093 CTGATTTCCCGGGACGAGGG 60112 || || || || |||||||| Sbjct 48883 CTTATCTCTCGCGACGAGGG 48864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548513280979200