Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148295.1_202016-10-31] 1,680 sequences; 40,142,277 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1579 170 4e-37 seq1455 131 4e-25 seq537 120 7e-22 >seq1579 Length=49950 Score = 170 bits (188), Expect = 4e-37 Identities = 171/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||| | || ||||| || |||||||| || || || || Sbjct 29017 ACGAAGACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 29076 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||||||||| |||||| || |||||||| ||||| || ||||| ||||||| || Sbjct 29077 ACGTCCATCTTCCAACTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGAATACC 29136 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||||||||||||| || ||||| ||||||||||||||| |||||| || || Sbjct 29137 TTCCTTGTCCTGGATCTTCGTCTTGACGTTGTCGATGGTGTCAGAGGATTCAACTTCTAG 29196 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || ||||| ||||| || || | ||||| Sbjct 29197 TGTAATAGTCTTGCCGGTGAGGGTCTTCACGAAGATTTGCAT 29238 Score = 156 bits (172), Expect = 1e-32 Identities = 150/191 (79%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||||||||| |||||||| || |||||||| || || | ||||| | ||||| Sbjct 29483 AGGACAAGGTGAAGTGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCC 29542 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| | ||| || ||||| || || | ||| |||||||| Sbjct 29543 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGTGGGATTCCCTCCTTGTCT 29602 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTC---AGAGCTTTCAACCTCGAGAGTGATC 211079 || ||||| || ||||| ||||||||||| ||| |||||||| || |||||| Sbjct 29603 TGAATCTTGGTCTTGACGTTGTCGATGGTGTCGCTAGA---CTCAACCTCAAGGGTGATC 29659 Query 211080 GTCTTTCCCGT 211090 |||||||| || Sbjct 29660 GTCTTTCCTGT 29670 Score = 147 bits (162), Expect = 5e-30 Identities = 165/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || || | ||| || | ||| |||||||| || || |||||||| || || | | ||| Sbjct 29246 CGGAGACGTAGAACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTG 29305 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | |||||||| || |||||||| |||||||| | ||| || ||||| || || | || Sbjct 29306 CGGCCATCTTCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGTGGGATACCC 29365 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||||||||| || || || ||||||||||| || |||||||| | Sbjct 29366 TCCTTGTCCTGGATCTTGGTCTTGACATTGTCGATGGTGTCTGATGACTCAACCTCCAAG 29425 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| ||||| | |||||| || || | ||||| Sbjct 29426 GTGATGGTCTTGCCCGTCAAAGTCTTGACGAAGATTTGCAT 29466 >seq1455 Length=38904 Score = 131 bits (144), Expect = 4e-25 Identities = 149/196 (76%), Gaps = 3/196 (2%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCT 210969 ||||| ||| | | | ||||||||||| || || | ||| ||| | |||||| |||| | Sbjct 28518 GTGAAAAGTCG-CACCTTTTGGATGTTGTAGTCGCTCAA-GGTACGTCCATCCTCCAATT 28575 Query 210970 GCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCT 211029 |||| || || ||||| | || |||||||| || |||| ||| |||||||| ||||||| Sbjct 28576 GCTTTCCAGCAAAGATTAATCGCTGTTGGTCTGGCGGAATTCCCTCCTTGTCTTGGATCT 28635 Query 211030 TTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCG 211089 | || || || ||||| ||||||||| || ||||| || ||||| ||||| |||| Sbjct 28636 TGGTCTTGACATTGTCGATAGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCG 28695 Query 211090 TGAGAGTCTTTACAAA 211105 |||| || || || || Sbjct 28696 TGAGGGTTTTGACGAA 28711 >seq537 Length=52655 Score = 120 bits (132), Expect = 7e-22 Identities = 104/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| |||| ||||| ||||| || || ||||| || |||||||| || |||| ||||| Sbjct 29337 ACGGAGTCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGATAGGGT 29396 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||||||| ||||||||||| |||||||| | ||| || ||||| || || | ||| Sbjct 29397 GCGTCCATCTTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGGATTCC 29456 Query 211013 TTCCTTGTC 211021 ||||||||| Sbjct 29457 TTCCTTGTC 29465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159127049253200