Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148295.1_202016-10-31] 1,680 sequences; 40,142,277 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1579 170 5e-37 seq1455 129 1e-24 seq537 91.5 4e-13 >seq1579 Length=49950 Score = 170 bits (188), Expect = 5e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||||||||||||||| || |||| ||||| |||| ||| || | |||||| Sbjct 29255 AGAACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCATCT 29314 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || |||||||| | || || ||||| || || ||||| |||||||| Sbjct 29315 TCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCC 29374 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| |||||||||||||| | || || || || ||||| ||| Sbjct 29375 TGGATCTTGGTCTTGACATTGTCGATGGTGTCTGATGACTCAACCTCCAAGGTGATGGTC 29434 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||||||||| || | ||| | |||||| Sbjct 29435 TTGCCCGTCAAAGTCTTGACGAAGATTTGCAT 29466 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| | || || || || |||| ||||| ||| || || Sbjct 29017 ACGAAGACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 29076 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | |||||| || |||||||| || || || ||||| || |||||||| Sbjct 29077 ACGTCCATCTTCCAACTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGAATACC 29136 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| |||||||| ||| || ||||||||||| |||| ||| || |||| Sbjct 29137 TTCCTTGTCCTGGATCTTCGTCTTGACGTTGTCGATGGTGTCAGAGGATTCAACTTCTAG 29196 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||||||| || | || || | ||| | |||||| Sbjct 29197 TGTAATAGTCTTGCCGGTGAGGGTCTTCACGAAGATTTGCAT 29238 Score = 118 bits (130), Expect = 3e-21 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||||||||| || ||||| || || |||| ||||| |||| | |||| ||||| Sbjct 29483 AGGACAAGGTGAAGTGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCC 29542 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| | || || ||||| || || || || ||||||||| Sbjct 29543 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGTGGGATTCCCTCCTTGTCT 29602 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| || ||||||||||| | || || || | ||||||||| Sbjct 29603 TGAATCTTGGTCTTGACGTTGTCGATGGTGTCGCTAGACTCAACCTCAAGGGTGATCGTC 29662 Query 225682 TTGCCCGTCA 225691 || || |||| Sbjct 29663 TTTCCTGTCA 29672 >seq1455 Length=38904 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 ||||||| ||||| ||| ||| || | ||||| || | ||||| ||||| ||||| Sbjct 28533 TTTTGGATGTTGTAGTCGCTCAAGGTACGTCCATCCTCCAATTGCTTTCCAGCAAAGATT 28592 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | ||| |||||||| |||||||| || ||||||||||||||||| ||| ||| ||| Sbjct 28593 AATCGCTGTTGGTCTGGCGGAATTCCCTCCTTGTCTTGGATCTTGGTCTTGACATTGTCG 28652 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 || ||||| |||| || || || | ||||| ||||||||||| | ||||| | ||| Sbjct 28653 ATAGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTTTTGACGAA 28711 >seq537 Length=52655 Score = 91.5 bits (100), Expect = 4e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| |||| ||||| |||||||| || || || || |||| ||||| || | | || Sbjct 29337 ACGGAGTCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGATAGGGT 29396 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| || |||||||| | || || ||||| || || || || Sbjct 29397 GCGTCCATCTTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGGATTCC 29456 Query 225612 TTCCTTGTCT 225621 |||||||||| Sbjct 29457 TTCCTTGTCT 29466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192505530765920