Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148295.1_202016-10-31] 1,680 sequences; 40,142,277 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1579 140 2e-28 seq1455 86.0 5e-12 >seq1579 Length=49950 Score = 140 bits (154), Expect = 2e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| | || |||||| ||||||||||| ||| || || | || || Sbjct 29029 CACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGTCCATCTTC 29088 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || |||||| ||||| ||||| | |||||||| |||| ||| | ||||||||| ||| Sbjct 29089 CAACTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTG 29148 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 |||||| ||| | | | |||||||| | |||||| || || | ||||| ||||| Sbjct 29149 GATCTTCGTCTTGACGTTGTCGATGGTGTCAGAGGATTCAACTTCTAGTGTAATAGTCTT 29208 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || |||||||||||||||||||||||||| Sbjct 29209 GCCGGTGAGGGTCTTCACGAAGATTTGCAT 29238 Score = 127 bits (140), Expect = 1e-24 Identities = 158/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187 |||| ||| || ||| ||||| ||||||||||| |||| | || | ||| | || || Sbjct 29258 ACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGT-GCGGCCATCTTC 29316 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || ||||| ||||| |||||||| |||||||| |||| || | ||| ||||| ||| Sbjct 29317 GAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTG 29376 Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| ||| || ||| | |||||||| | || || ||||||| || || ||| Sbjct 29377 GATCTTGGTCTTGACATTGT--CGATGGTGTCTGATGACTCAACCTCCAAGGTGATGGTC 29434 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| | ||||| |||||||||||||| Sbjct 29435 TTGCCCGTCAAAGTCTTGACGAAGATTTGCAT 29466 Score = 104 bits (114), Expect = 2e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| ||| |||||| ||||||||||| |||| ||| || | || || Sbjct 29486 ACAAGGTGAAGTGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCG 29545 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| |||||||| |||||||| |||| || | || ||||| || Sbjct 29546 AGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGA 29605 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | ||||||||| || || ||||| | || ||||||||| Sbjct 29606 ATCTTGGTCTTGACGTTGTCGATGGTGTCGCTAGACTCAACCTCAAGGGTGATCGTCTTT 29665 Query 44309 CCCGT 44313 || || Sbjct 29666 CCTGT 29670 >seq1455 Length=38904 Score = 86.0 bits (94), Expect = 5e-12 Identities = 132/184 (72%), Gaps = 6/184 (3%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 |||||||||||||||| ||| | || | || | || |||| ||||| || |||||| Sbjct 28531 CCTTTTGGATGTTGTAGTCGCTCAAGGTA-CGTCCATCCTCCAATTGCTTTCCAGCAAAG 28589 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATG 44264 || || ||||| || |||| || | || ||||| || ||||| ||| || || Sbjct 28590 ATTAATCGCTGTTGGTCTGGCGGAATTCCCTCCTTGTCTTGGATCTTGGTCTTGACATTG 28649 Query 44265 TTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 | | || ||||| | ||| || ||||| | || || ||||| ||||||||||| || | Sbjct 28650 T--CGATAGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTTTTGA 28707 Query 44325 CGAA 44328 |||| Sbjct 28708 CGAA 28711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359983029196560