Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148295.1_202016-10-31] 1,680 sequences; 40,142,277 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1579 154 4e-32 seq537 93.3 1e-13 >seq1579 Length=49950 Score = 154 bits (170), Expect = 4e-32 Identities = 158/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| || ||||| || || || || || || || || ||| ||| ||| Sbjct 29235 CAAATCTTCGTGAAGACCCTCACCGGCAAGACTATTACACTAGAAGTTGAATCCTCTGAC 29176 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| ||||| || ||||| |||||||| Sbjct 29175 ACCATCGACAACGTCAAGACGAAGATCCAGGACAAGGAAGGTATTCCTCCAGACCAGCAG 29116 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||||||||| ||| | ||||||||| | || || ||| || ||| || Sbjct 29115 CGCCTCATCTTCGCCGGAAAGCAGTTGGAAGATGGACGTACGCTGAGCGACTACAACATC 29056 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || |||| |||| Sbjct 29055 CAGAAGGAGTCGACCTTGCA-CTTG 29032 Score = 147 bits (162), Expect = 5e-30 Identities = 146/188 (78%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCAGACACCATCGAGAACGTCAAA 178001 |||||||| ||||||||||| ||||| || ||| ||||||||||| |||||||| Sbjct 29670 ACAGGAAAGACGATCACCCTTGAGGTTGAGTCTAGC---GACACCATCGACAACGTCAAG 29614 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 |||||||| ||||| || |||||||| || |||||||| || | ||||||||||| Sbjct 29613 ACCAAGATTCAAGACAAGGAGGGAATCCCACCAGACCAGCAGCGCTTGATCTTCGCCGGC 29554 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTG 178121 || |||||||| ||||| | || || |||| || ||| |||| || || || ||||| Sbjct 29553 AAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAGGAGTCCACACTT 29494 Query 178122 CATCTTGT 178129 || ||||| Sbjct 29493 CACCTTGT 29486 Score = 141 bits (156), Expect = 2e-28 Identities = 159/209 (76%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||| | || || || || |||||| | ||||| || |||||| Sbjct 29463 CAAATCTTCGTCAAGACTTTGACGGGCAAGACCATCACCTTGGAGGTTGAGTCATCAGAC 29404 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 29403 ACCATCGACAATGTCAAGACCAAGATCCAGGACAAGGAGGGTATCCCACCAGACCAGCAG 29344 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | ||||||||||| || || ||||||||||| | || |||| |||| || ||| | Sbjct 29343 CGCTTGATCTTCGCCGGCAAGCAACTCGAAGATGGCCGCAC-CTTGTCCGACTACAACAT 29285 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTT 178131 ||| || ||||| || || || |||| || Sbjct 29284 CCAGAAGGAATCCACTCTCCA-CTTGGTT 29257 >seq537 Length=52655 Score = 93.3 bits (102), Expect = 1e-13 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073 ||||| ||||||||||| || |||||||| || | ||||||||||| || ||||||||| Sbjct 29465 GACAAGGAAGGAATCCCCCCAGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAA 29406 Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||||| | || || | || || ||| |||| || || || || || || || || Sbjct 29405 GATGGACGCACCCTATCGGACTACAACATCCAGAAGGAGTCGACCCTCCACCTCGT 29350 Score = 84.2 bits (92), Expect = 5e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || ||||| || || || ||||||||||||||||| ||| ||| Sbjct 29607 CAGATTTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCCTCCGAC 29548 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGG 178014 ||||| || || ||||| |||||||||| Sbjct 29547 ACCATTGACAATGTCAAGACCAAGATTCAGG 29517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203705289685920