Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148305.1_202016-10-31] 1,413 sequences; 60,939,407 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq782 98.7 1e-15 seq549 82.4 9e-11 >seq782 Length=233898 Score = 98.7 bits (108), Expect = 1e-15 Identities = 342/528 (65%), Gaps = 7/528 (1%) Strand=Plus/Minus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 ||||| || ||||| || || || | | || || || ||||||||||| || || ||| Sbjct 101135 GTGAACTGGATGGGTGCTGAAGCAGCCATGGTTCGGAGGTAGTACATTCCAGTCTTGAGA 101076 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927 || | |||| || ||| ||||| || | ||| |||| ||| || Sbjct 101075 CCCATCTTCCAACCAGCAAAGTGCATGGAAGTAATCTTGCCCATGGTCGGCTCTTTCATG 101016 Query 52928 TGGATATTCATAGAT-TGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 52986 || || |||| || | ||| |||||| |||||||| || | || |||||||| | || Sbjct 101015 TGAATGTTCA-AGCTCTGAGATTGATCAATGAAGGCGCCACGATCCGCAGCCATGGTGAT 100957 Query 52987 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 53046 || || || |||||||||| || || |||| ||| ||||| || |||| Sbjct 100956 AATGGTACGCTGGCTGATTTCCCAAACCGTCTTGTAAAGGGCCTTGATATCATCGGGAAT 100897 Query 53047 GTTTG---TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATT 53103 || | | ||||| ||||| ||||| ||| | || || | |||||| || | || Sbjct 100896 ATTAGGAATGTTCTGGATAGAACCACCCTCTGCAATGATACGATTCTTCATGTTGTCCGA 100837 Query 53104 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 53163 ||| | ||||| | | || | || || || || || ||||| ||||| || Sbjct 100836 CCAAAGACCCATCTCGACGAGATCTTTGAGCAGCCATGGGTTGACGACTTGGAATTCCCC 100777 Query 53164 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 53223 || | || | |||| ||| ||||| || || || || | |||| || || Sbjct 100776 AGCAAGCACACGACGAGAGTAGATATTTGACGTGTATGGCTCGAAGCACTCGTTGAAACC 100717 Query 53224 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA-TTTCTAAGAC 53282 | |||||||| || || ||||| |||||||| | || ||| || | || | || || Sbjct 100716 GAGAATTTGAGATGTGGAAGCAGTTGGCATAGGAG-CAACAAGAAGTGAGTTGCGAATAC 100658 Query 53283 CGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCG 53330 ||| | |||| | | | || || | ||||| | ||| ||||||| Sbjct 100657 CGTGCTTCTTGATATCAGCCTTGAGCGAGTCCCAGTCCCAGAGATCCG 100610 Score = 82.4 bits (90), Expect = 9e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 53701 CAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTAT 53760 ||| || || ||||||| || ||||| || ||||||| || | | || | || || Sbjct 100233 CAAAGCCATGGATGCCAAGTTGCAAACAGCAACCTCATCAGGCGCAGAGTACTCAATGAT 100174 Query 53761 CTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 53820 ||||||||| ||||| | |||||||| || || | ||||| ||||| ||| Sbjct 100173 CTCAGTGCACAGATTGGAGCTGCGAATGGTTCCCAAGTTCTTCTGATTGCTCTTGCGGTT 100114 Query 53821 ACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGC 53880 || ||||| || ||||| ||||| || | ||||| || |||||| || | ||| || Sbjct 100113 GCAAGCATCTTTGTAAAGCATGAAAGGGTTGCCAGTCTCGGTCTGGGCTTGAAGAATGGC 100054 Query 53881 TTTCCAGA 53888 | ||||| Sbjct 100053 GTACCAGA 100046 >seq549 Length=285283 Score = 82.4 bits (90), Expect = 9e-11 Identities = 174/258 (67%), Gaps = 5/258 (2%) Strand=Plus/Plus Query 24432 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 24491 || ||||| |||||||| ||||| |||||||| ||||| || |||| || || | || | Sbjct 207343 TCGGAATGGATGTTTTCCATGGCGATTTGAAAACCGTAAAAGCATCGGGCTTCTGGAACC 207402 Query 24492 TGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 24551 || ||||| | | ||| ||||| | || || || || || || || ||||| Sbjct 207403 TGAACTTCGTTGCTAAAACGTTCGAGGAGGTTCTCGTTGACGATGCCATCCGATGCTGCG 207462 Query 24552 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA----GTTTATTCCA 24607 ||||| || | | ||| || ||| | |||||| | ||| | || ||||| Sbjct 207463 AAAAATGCGAGAATGTGTGAGATGAAAAAGCGTTCGTC-GTCGTTCAGGCGGTTGTTCCA 207521 Query 24608 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 24667 || | ||||| || | ||| | ||||| | ||||||||||| ||| |||||| Sbjct 207522 GTCTGGAACGTCTTTGGAGAGATCGATCTCTTCGGCGGTCCAAAATGAGGCCATTGCCTT 207581 Query 24668 TTTATACATATTCCAGAT 24685 || ||||| |||||| Sbjct 207582 CTTGTACATGCGCCAGAT 207599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593711113392240