Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148305.1_202016-10-31] 1,413 sequences; 60,939,407 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq859 113 3e-20 >seq859 Length=478526 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | ||||||| ||| || || || ||||| |||||||||||| | Sbjct 225993 CCGCCACGAAGACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGCTC 225934 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| | || ||||||||||| || ||||| ||||| ||||||||||| || Sbjct 225933 AGCGTACGTCCATCTTCCAACTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGA 225874 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||| ||| | | | | || | || | ||||| || Sbjct 225873 ATACCTTCCTTGTCCTGGATCTTCGTCTTGACGTTGTCGATGGTGTCAGAGGATTCAACT 225814 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || || || ||||||||||| || ||||| ||||| ||||| Sbjct 225813 TCTAGTGTAATAGTCTTGCCGGTGAGGGTCTTCACGAAGATTTGCAT 225767 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || |||| ||| | ||| ||| ||||| ||||||||||||||| Sbjct 225765 CCACCGCGGAGACGTAGAACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAC 225706 Query 34223 A-GCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 | | || ||| | || || | |||||||| ||||| || | ||||||||||| || Sbjct 225705 AAGGTG-CGGCCATCTTCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGTGG 225647 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||| ||| | || | | || | || | || || || Sbjct 225646 GATACCCTCCTTGTCCTGGATCTTGGTCTTGACATTGTCGATGGTGTCTGATGACTCAAC 225587 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||| || | ||| || || ||||| ||||| Sbjct 225586 CTCCAAGGTGATGGTCTTGCCCGTCAAAGTCTTGACGAAGATTTGCAT 225539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323066436397280