Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148305.1_202016-10-31] 1,413 sequences; 60,939,407 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq782 253 2e-62 seq549 122 8e-23 seq859 111 1e-19 >seq782 Length=233898 Score = 253 bits (280), Expect = 2e-62 Identities = 634/951 (67%), Gaps = 18/951 (2%) Strand=Plus/Minus Query 23249 TACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGC 23308 ||||| | ||| | || || || ||| ||||||| ||||| || || || | | Sbjct 99953 TACTTCTCGTAGAGAGCTTCGAACTCGTCACCGTAGATATCGGCAAGACCAGGGCACTCG 99894 Query 23309 ATCGGACACATGAGACTCCACATTG--AGTCATTTTCAACGCGTCTCATAAAAAGATCCG 23366 || ||||||||| |||| | | | || | ||| ||||| |||| || || || | Sbjct 99893 TGAGGGCACATGAGAGTCCAG-TCGCCATTC-TGTTCGACGCGCTTCATGAACAGGTCGG 99836 Query 23367 GTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTT 23426 | ||||| | || ||||| || || || || ||| | || ||||||||| ||||||| Sbjct 99835 GAATCCACAAGGCATAGAAAAGATCACGAGCACGCGCTTCTTCTTTGCCGTGGTTCTTTC 99776 Query 23427 TCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGC 23486 ||| ||| || ||| || || || || ||||| ||||||||||| | ||| || || | Sbjct 99775 TCAGATCTAACCAGTTGAAGACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAATGCAC 99716 Query 23487 CCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCA 23546 | || | ||| ||||| || ||||| ||||| || || || || | || | |||| Sbjct 99715 CAGGACGCTTGTTGCCACCTTGATCAACGTAGCGAGCAGTCGCGTCAAAGACACGGAGCA 99656 Query 23547 TCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAA 23606 | || || |||||||| || | |||| | || | | || || | ||||| | Sbjct 99655 TAGGAACAAGACCGTTCGATGTGCCGTTTGTTCCTCCAATGTATGATCCAGTGGCTCGGA 99596 Query 23607 CGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCA 23666 | || | || | || || || || | | || || ||||| || || || | Sbjct 99595 TGCGATGTATGTTAAGGCCGATACCACCAGCGGTCTTTGAAATCATAGCACAAGTCTTGA 99536 Query 23667 GAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACA 23726 | ||||||||||| ||||||||||||||||| || || | | | ||| || || || | Sbjct 99535 GGGTGTCGTAGATACCCTCGATGCTGTCCTCCTTCGTGTCAATGAGGAAGCAAGACGAGA 99476 Query 23727 TTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCAT 23786 ||||| || || || | || ||| ||||| ||| ||||||||| |||||| | Sbjct 99475 GTTGCGGTTGAGGTGTGCCTGCGTTGAAAAGTGTAGGGGAGGCGTGCGTGAAGTATTTGT 99416 Query 23787 TCGACAT-TAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATG 23845 | ||||| ||| ||||| || | ||||| | ||||||||||||||||| || |||| Sbjct 99415 TAGACATGTAG-TTGTATGTCTGTATGGCAGATTCAATGTCCTCTCCGTGAATGCCGACT 99357 Query 23846 GCGACGCGCATCATCATGTATTGAGGTCTCT---CGACCGTGACGCCGTTAATTTTGAAC 23902 || || ||||| ||||| | ||| || | || ||||| | |||| | ||| || Sbjct 99356 GCCACACGCATGATCATATGTTGTGGACGCTCAGCGACCTT---GCCGCTTATTCGGAGT 99300 Query 23903 AGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGC 23962 || ||||| || | || || || || ||||| || | || || || || | |||| Sbjct 99299 AGGTATGATCGCTCCAGAGTCTTGAAGCCAAAGTATTGGTAATTGAAATCTCTGTCGTAT 99240 Query 23963 ACTATGGCCGAATTCAAACGGTACGCATTGGCAGC--GATGATGTTGTAATGAAAATTCG 24020 || ||||| || ||||| | ||||| || | || | | ||||| | | || Sbjct 99239 ACAATGGCAGAGTTCAACTCATCCGCAT--GCTTCATGACGGTCTTGTATGTGATGTCCG 99182 Query 24021 ATATCATCGGCGTTTTAACGCCGGTCTTTGGATCGATCGCTTCATACATATCGATAATGA 24080 | ||||| || ||| | | ||||||| | ||| || || | || |||| Sbjct 99181 AAATCATAGGGCATTTCTTGTTGTTCTTTGGGTTGATATAATCGTAGAGGTCTTGGATGA 99122 Query 24081 CATC-GAAAAAAGAATCTTTAGTCTCCTTGTGCAAATTAGACACGGCCAATCTAGCCGCA 24139 || | || || | || || || | |||||| | ||| || ||||| | | || ||| Sbjct 99121 CAGCAGAGAACTGCTTC-TTGGTTTGCTTGTGAAGATTCGATACGGCGATACGTGCTGCA 99063 Query 24140 AGCAACGAATAGTCGGAATGATCGATGGTCATGGCCGCTGCCGTCTCGGCG 24190 || | | ||||||| ||| || ||||||| |||||| ||||| ||| Sbjct 99062 AGGATTGCGTAGTCGGGATGTGTGACGGTCATGTACGCTGCTGTCTCAGCG 99012 >seq549 Length=285283 Score = 122 bits (134), Expect = 8e-23 Identities = 282/420 (67%), Gaps = 10/420 (2%) Strand=Plus/Minus Query 57979 TCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGA 58038 |||| ||||| || ||||| ||||| ||||| ||| |||||| | || || ||| Sbjct 207135 TCGCATTCGCAGCTGTCGAGGGTATCTTCTTCAGCGGCGCCTTTGCATCTATCTTCTGGC 207076 Query 58039 TGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACG 58098 | ||||| ||||| || ||||||||| |||| || |||||| | || || ||||||| Sbjct 207075 TCAAGAAGCGCGGTCTCATGCCCGGCTTGACCTTCTCCAACGAACTTATCTCTCGCGACG 207016 Query 58099 AGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGC 58158 |||| | || || || ||||| ||||| | | ||| || | ||| || || ||| Sbjct 207015 AGGGAATGCACACCGACTTTGCCTGCCTCCTCTTCTCACAGCTCAACAAGAAGCCTTCGC 206956 Query 58159 GGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCG 58218 || | || | ||| ||||||||||| || || || | || || | | || Sbjct 206955 CTGAAGCCGTCCGCGCCATCATCACCGAGGCAGTACAAATTGAGCAGGAATTCTTGAGCG 206896 Query 58219 AAGCCCTACCGGTGGCCA-TGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAG 58277 |||| |||| ||| | ||||||| |||||| | | |||| ||||||| ||| Sbjct 206895 AAGCATTACC-GTGCAGATTGCTCGGCATGAACTCTACCCTCATGTGCCAGTACATCGAG 206837 Query 58278 TTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAGAGCGTCA----TTACAACACGAA 58333 |||||||| || | || ||||| | | |||| | |||| ||||||| | Sbjct 206836 TTTGTTGCTGATCGTCTCTTGCTTG---CGCTTGG-CAATGTCAAGGTTTACAACGCCGT 206781 Query 58334 AAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAA 58393 || || || || || ||| | || || || | || ||||| ||||||||||| || Sbjct 206780 CAACCCCTTCGACTTCATGGAGAACATATCTCTTGCCGGAAAGACTAACTTTTTCGAGAA 206721 Score = 107 bits (118), Expect = 2e-18 Identities = 196/284 (69%), Gaps = 5/284 (2%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| ||||||||| |||||| || || |||||||||| |||||| | || || Sbjct 207599 ATCTGGCGCATGTACAAGAAGGCAATGGCCTCATTTTGGACCGCCGAAGAGATCGATCTC 207540 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCCTC---AAAGAATCTGAGAGAAATTTTATTAAA 57686 || || || | || ||| | || | || || || | ||| || | Sbjct 207539 TCCAAAGACGTTCCAGACTGGAACAACCGCCTGAACGACGACGAACGCTTTTTCATCTCA 207480 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||| | | || |||||||| ||||| ||||| || || |||||||| | ||||| | Sbjct 207479 CACATTCTCGCATTTTTCGCAGCATCGGATGGCATCGTCAACGAGAACCTCCTCGAACG- 207421 Query 57747 TTTTCACAA-GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCAT 57805 |||| ||| ||||| || || | || || ||||||||||||| |||||| | ||||| Sbjct 207420 TTTTAGCAACGAAGTTCAGGTTCCAGAAGCCCGATGCTTTTACGGTTTTCAAATCGCCAT 207361 Query 57806 TGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGT 57849 |||||| | ||||| || | || || || || ||||| |||| Sbjct 207360 GGAAAACATCCATTCCGAGACATACTCCCTCCTGATCGAGACGT 207317 >seq859 Length=478526 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || || ||||| || || || | || |||||| | || Sbjct 225767 ATGCAAATCTTCGTGAAGACCCTCACCGGCAAGACTATTACACTAGAAGTTGAATCCTCT 225826 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || |||||||||||| | || || |||||| Sbjct 225827 GACACCATCGACAACGTCAAGACGAAGATCCAGGACAAGGAAGGTATTCCTCCAGACCAG 225886 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 ||||| || || ||||| || || ||||||||||| | | | || ||||||| || || Sbjct 225887 CAGCGCCTCATCTTCGCCGGAAAGCAGTTGGAAGA-TGGACGTACGCTGAGCGACTACAA 225945 Query 31372 CATTCAAAAAGAATCGAC 31389 ||| || || || ||||| Sbjct 225946 CATCCAGAAGGAGTCGAC 225963 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| |||||| |||| ||||| || |||||| | || ||||| | || Sbjct 225539 ATGCAAATCTTCGTCAAGACTTTGACGGGCAAGACCATCACCTTGGAGGTTGAGTCATCA 225598 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || ||| | ||||||||| || | || || ||||| Sbjct 225599 GACACCATCGACAATGTCAAGACCAAGA-TCCAGGACAAGGAGGGTATCCCACCAGACCA 225657 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| | || ||||| ||||| || | ||||| || || ||| || || Sbjct 225658 GCAGCGCTTGATCTTCGCCGGCAAGCAACTCGAAGATGGCCGCACCTTGTCCGACTACAA 225717 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || ||||| ||||| || |||| || Sbjct 225718 CATCCAGAAGGAATCCACTCTCCACTTGGTTCT 225750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445758526650960