Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148305.1_202016-10-31] 1,413 sequences; 60,939,407 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq782 107 2e-18 seq549 82.4 1e-10 >seq782 Length=233898 Score = 107 bits (118), Expect = 2e-18 Identities = 463/725 (64%), Gaps = 8/725 (1%) Strand=Plus/Minus Query 63188 TTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGA 63247 |||||||||||| || | | || | | | | ||| || || | || ||||| | | Sbjct 99936 TTCGAACTCGTCACCGTAGATATCGGCAAGACCAGGGCACTCGTGAGGGCACATGAGAGT 99877 Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 63306 ||| || || | | | || || ||||| || || || |||||||| | || ||| | Sbjct 99876 CCAGTCGCCATTCTGTTCGACGCGCTTCATGAACAGGTCGGGAATCCACA-AGGCATAGA 99818 Query 63307 ATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63366 | ||||| | | | ||| || || || |||||| | ||||| | | | Sbjct 99817 AAAGATCACGAGCACGCGCTTCTTCTTTGCCGTGGTTCTTTCTCAGATCTAACCAGTTGA 99758 Query 63367 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63426 | ||| | ||||| || || | ||| ||||| | | ||||| || ||||| || | Sbjct 99757 AGACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAATGCACCAGGACGCTTGTTGCCAC 99698 Query 63427 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTG 63486 | ||||| | ||| | ||| || | | | || | | ||| |||| || |||||| | Sbjct 99697 CTTGATCAACGTAGCGAGCAGTCGCGTCAAAGACACGGAGCATAGGAACAAGACCGTTCG 99638 Query 63487 ATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGAC 63546 || | || || || || || || |||| |||| || || | || || | Sbjct 99637 ATGTGCCGTTTGTTCCTCCAATGTATGATCCAGTGGCTCGGATGCGATGTATGTTAAGGC 99578 Query 63547 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTT 63606 | || || || || | || || || | || || || | ||||| ||||| || | Sbjct 99577 CGATACCACCAGCGGTCTTTGAAATCATAGCACAAGTCTTGAGGGTGTCGTAGATACCCT 99518 Query 63607 CTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTC 63666 | ||||| || || || ||| || || || || || | ||| | ||| || | Sbjct 99517 CGATGCTGTCCTCCTTCGTGTCAATGAGGAAGCAAGACGAGAGTTGCGGTTGAGGTGTGC 99458 Query 63667 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTGTAC 63725 | || || || | ||||| || |||||||| || |||| | ||| | |||| ||||| Sbjct 99457 CTGCGTTGAAAAGTGTAGGGGAGGCGTGCGTGAAGTATTTGTTAGACATGTAG-TTGTAT 99399 Query 63726 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 63785 |||| || || || || || ||| | ||||| || ||||| |||||||| | ||| Sbjct 99398 GTCTGTATGGCAGATTCAATGTCCTCTCCGTGAATGCCGACTGCCACACGCATGATCATA 99339 Query 63786 TGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 63845 || || || | ||| | | ||| | ||||| | | ||| ||| |||| ||| Sbjct 99338 TGTTGTGGACGCTCAGCGACCTTGCCGCTTATTCGGAGTAGGTATGATCGCTCCAGAGTC 99279 Query 63846 TTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCT 63903 || || ||||| || | ||| ||||| |||| ||||| | ||| | || || | || Sbjct 99278 TTGAAGCCAAAGTATTGGTAATTGAAA--TCTCTGTCGTATACAATGGCAGAGTTCAACT 99221 Query 63904 TATCC 63908 |||| Sbjct 99220 CATCC 99216 Score = 98.7 bits (108), Expect = 1e-15 Identities = 299/459 (65%), Gaps = 5/459 (1%) Strand=Plus/Minus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 ||||| || ||||| || || || | | || || || ||||||||||| || || ||| Sbjct 101135 GTGAACTGGATGGGTGCTGAAGCAGCCATGGTTCGGAGGTAGTACATTCCAGTCTTGAGA 101076 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62165 || | |||| || ||| ||||| || | ||| |||| ||| || Sbjct 101075 CCCATCTTCCAACCAGCAAAGTGCATGGAAGTAATCTTGCCCATGGTCGGCTCTTTCATG 101016 Query 62166 TGGATATTCATAGAT-TGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 62224 || || |||| || | ||| |||||| |||||||| || | || |||||||| | || Sbjct 101015 TGAATGTTCA-AGCTCTGAGATTGATCAATGAAGGCGCCACGATCCGCAGCCATGGTGAT 100957 Query 62225 GATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 62284 || || || |||||||||| || || |||| ||| ||||| || |||| Sbjct 100956 AATGGTACGCTGGCTGATTTCCCAAACCGTCTTGTAAAGGGCCTTGATATCATCGGGAAT 100897 Query 62285 GTTTGTA---TTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATT 62341 || | | ||||| || || ||||| ||| | || || | |||||| || | || Sbjct 100896 ATTAGGAATGTTCTGGATAGAACCACCCTCTGCAATGATACGATTCTTCATGTTGTCCGA 100837 Query 62342 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCC 62401 ||| | ||||| | | || | || || ||||| || ||||||||||| || Sbjct 100836 CCAAAGACCCATCTCGACGAGATCTTTGAGCAGCCATGGGTTGACGACTTGGAATTCCCC 100777 Query 62402 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCC 62461 || | || | |||| ||| ||||| || || || || | |||| || || Sbjct 100776 AGCAAGCACACGACGAGAGTAGATATTTGACGTGTATGGCTCGAAGCACTCGTTGAAACC 100717 Query 62462 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCAC 62500 | |||||||| || || ||||| |||||||| || || Sbjct 100716 GAGAATTTGAGATGTGGAAGCAGTTGGCATAGGAGCAAC 100678 >seq549 Length=285283 Score = 82.4 bits (90), Expect = 1e-10 Identities = 174/258 (67%), Gaps = 5/258 (2%) Strand=Plus/Plus Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938 || ||||| |||||||| ||||| || ||||| ||||| || |||| || || | || | Sbjct 207343 TCGGAATGGATGTTTTCCATGGCGATTTGAAAACCGTAAAAGCATCGGGCTTCTGGAACC 207402 Query 33939 TGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCA 33998 || ||||| | | ||| ||||| | || || || || || ||||| ||||| Sbjct 207403 TGAACTTCGTTGCTAAAACGTTCGAGGAGGTTCTCGTTGACGATGCCATCCGATGCTGCG 207462 Query 33999 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA----GTTTATTCCA 34054 ||||| || | | ||| || ||| | |||||| | ||| | || ||||| Sbjct 207463 AAAAATGCGAGAATGTGTGAGATGAAAAAGCGTTCGTC-GTCGTTCAGGCGGTTGTTCCA 207521 Query 34055 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 34114 || | ||||| || | ||| | ||||| | ||||||||||| ||| |||||| Sbjct 207522 GTCTGGAACGTCTTTGGAGAGATCGATCTCTTCGGCGGTCCAAAATGAGGCCATTGCCTT 207581 Query 34115 TTTATACATATTCCAGAT 34132 || ||||| |||||| Sbjct 207582 CTTGTACATGCGCCAGAT 207599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629806475846640