Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148305.1_202016-10-31] 1,413 sequences; 60,939,407 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq549 147 3e-30 seq14 109 8e-19 seq782 86.0 9e-12 >seq549 Length=285283 Score = 147 bits (162), Expect = 3e-30 Identities = 295/434 (68%), Gaps = 19/434 (4%) Strand=Plus/Minus Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486 || || |||||||| || || ||||| |||||||| || ||||| | ||||| Sbjct 207139 CTCGTCGCATTCGCAGCTGTCGAGGGTATCTTCTTCAGCGGCGCCTTTGCATCTATCTTC 207080 Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGA 125546 ||||||||||||||||| ||||||||||| |||| | ||||| |||| ||||| Sbjct 207079 TGGCTCAAGAAGCGCGGTCTCATGCCCGGCTTGACCTTCTCCAACGAACTTATCTCTCGC 207020 Query 125547 GACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACTATCTGCGTCCCGA 125605 |||||||| | ||| ||||||||| || || || || || || | | || Sbjct 207019 GACGAGGGAATGCACACCGACTTTGCCTGCCTCCTCTTCTCACAGCT-----CAACAAGA 206965 Query 125606 GTGCAGATCCAGCGA-TGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAAC 125664 | || || |||| ||| | ||| | ||||| || || || || | Sbjct 206964 ------AGCCTTCGCCTGAAGCCGTCCGCGCCATCATCACCGAGGCAGTACAAATTGAGC 206911 Query 125665 AAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGT 125724 | || || | | |||| | ||||| ||| || | |||||||||| | || |||| Sbjct 206910 AGGAATTCTTGAGCGAAGCATTACCGTGCAGATTGCTCGGCATGAACTCTACCCTCATGT 206851 Query 125725 GCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCG---CAAGA 125781 || ||||||| |||||||| || |||||||| || | | | |||| |||| Sbjct 206850 GCCAGTACATCGAGTTTGTTGCTGATCGTCTCTTGCTTGCGCT---TGGCAATGTCAAGG 206794 Query 125782 TTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCA 125841 ||||||||||| || ||||| || |||||| | |||||| || | || ||||| | Sbjct 206793 TTTACAACGCCGTCAACCCCTTCGACTTCATGGAGAACATATCTCTTGCCGGAAAGACTA 206734 Query 125842 ACTTTTTCGAGAAG 125855 |||||||||||||| Sbjct 206733 ACTTTTTCGAGAAG 206720 >seq14 Length=161381 Score = 109 bits (120), Expect = 8e-19 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 70062 AAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATG 70121 |||| || || || || || || ||||| ||||| ||| | || | || || |||||| Sbjct 120425 AAGAAGGTGACCTTGGACCGGTCTACGGGTTCCAATGGCGACATTTTGGAGCCGAGTATG 120484 Query 70122 TAGACTGCGAG-ACAGACTATTCGGGTCAGGGTGTTGATCAATTG-CAGACAATCATTGA 70179 | || ||| || ||||| ||| | ||||| || || |||||| || |||||| |||| || Sbjct 120485 TGGA-TGCAAGGACAGATTATACCGGTCAAGGCGTGGATCAACTGGCAGACA-TCATGGA 120542 Query 70180 CACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGA 70239 || || |||| ||| || ||| | | ||| | || | |||||||||||||||| Sbjct 120543 CAAACTGAAGAACAAGCCTTACGATCGCCGAATCATCTTGAGTGCATGGAATCCTGCAGA 120602 Query 70240 TTTGCACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTAC 70288 ||| ||||||| || || || || ||| ||||| |||||||| ||| Sbjct 120603 CTTGACGAAAATGGCCCTCCCCCCTTGCCACATGTTT-GCTCAGTTCTAC 120651 >seq782 Length=233898 Score = 86.0 bits (94), Expect = 9e-12 Identities = 208/315 (66%), Gaps = 0/315 (0%) Strand=Plus/Plus Query 96806 AACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACG 96865 ||||||||||| | | || || || || |||||| | | | | || | | || Sbjct 99624 AACAAACGGCACATCGAACGGTCTTGTTCCTATGCTCCGTGTCTTTGACGCGACTGCTCG 99683 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 |||||| || || ||||| || || || || || | ||| ||||| | || || || Sbjct 99684 CTACGTTGATCAAGGTGGCAACAAGCGTCCTGGTGCATTCGCCATCTACCTCGAGCCATG 99743 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985 |||||| || || || ||| | || || | || ||| ||| ||||| || || Sbjct 99744 GCACGCCGATGTCTTCAACTGGTTAGATCTGAGAAAGAACCACGGCAAAGAAGAAGCGCG 99803 Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGA 97045 || | || | || ||||| | ||| | || || ||||||||||||||||| | | Sbjct 99804 TGCTCGTGATCTTTTCTATGCCTTGTGGATTCCCGACCTGTTCATGAAGCGCGTCGAACA 99863 Query 97046 CGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGG 97105 |||| |||||| || |||||||| || || || ||||| ||||| || || Sbjct 99864 GAATGGCGACTGGACTCTCATGTGCCCTCACGAGTGCCCTGGTCTTGCCGATATCTACGG 99923 Query 97106 CGAAGAGTTTGAGGC 97120 || ||||| || || Sbjct 99924 TGACGAGTTCGAAGC 99938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741046111041880