Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148305.1_202016-10-31] 1,413 sequences; 60,939,407 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq782 129 7e-25 seq549 82.4 1e-10 >seq782 Length=233898 Score = 129 bits (142), Expect = 7e-25 Identities = 596/936 (64%), Gaps = 10/936 (1%) Strand=Plus/Minus Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 63196 |||||||||||| || | | || | | | ||||| || || | || ||||| | | Sbjct 99936 TTCGAACTCGTCACCGTAGATATCGGCAAGACCAGGGCACTCGTGAGGGCACATGAGAGT 99877 Query 63197 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 63255 ||| || || | | | || || ||||| || || || |||||||| | || ||| | Sbjct 99876 CCAGTCGCCATTCTGTTCGACGCGCTTCATGAACAGGTCGGGAATCCACA-AGGCATAGA 99818 Query 63256 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63315 | ||||| | | | ||| || || || |||||| | ||||| | | | Sbjct 99817 AAAGATCACGAGCACGCGCTTCTTCTTTGCCGTGGTTCTTTCTCAGATCTAACCAGTTGA 99758 Query 63316 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63375 | ||| | ||||| || || | ||| ||||| | | ||||| || ||||| || | Sbjct 99757 AGACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAATGCACCAGGACGCTTGTTGCCAC 99698 Query 63376 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTG 63435 | ||||| | ||| | ||| || | | | || | | ||| |||| || |||||| | Sbjct 99697 CTTGATCAACGTAGCGAGCAGTCGCGTCAAAGACACGGAGCATAGGAACAAGACCGTTCG 99638 Query 63436 ATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGAC 63495 || | || || || || || || |||| |||| || || | || || | Sbjct 99637 ATGTGCCGTTTGTTCCTCCAATGTATGATCCAGTGGCTCGGATGCGATGTATGTTAAGGC 99578 Query 63496 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCT 63555 | || || || || | || || || | || || || | ||||| |||||||||| Sbjct 99577 CGATACCACCAGCGGTCTTTGAAATCATAGCACAAGTCTTGAGGGTGTCGTAGATACCCT 99518 Query 63556 CTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 63615 | ||||| || || || ||| || || || || || | ||| | || || | Sbjct 99517 CGATGCTGTCCTCCTTCGTGTCAATGAGGAAGCAAGACGAGAGTTGCGGTTGAGGTGTGC 99458 Query 63616 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTGTAC 63674 | || || || | ||||| || |||||||| || |||| | ||| | |||| ||||| Sbjct 99457 CTGCGTTGAAAAGTGTAGGGGAGGCGTGCGTGAAGTATTTGTTAGACATGTAG-TTGTAT 99399 Query 63675 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 63734 |||| || || || || || ||| | ||||| || ||||| |||||||| | ||| Sbjct 99398 GTCTGTATGGCAGATTCAATGTCCTCTCCGTGAATGCCGACTGCCACACGCATGATCATA 99339 Query 63735 TGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 63794 || || || | ||| ||| |||| | ||||| | | ||| ||| |||| ||| Sbjct 99338 TGTTGTGGACGCTCAGCGACCTTGCCGCTTATTCGGAGTAGGTATGATCGCTCCAGAGTC 99279 Query 63795 TTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTT 63852 || || ||||| || | ||| ||||| |||| ||||| | ||| | ||||| | | Sbjct 99278 TTGAAGCCAAAGTATTGGTAATTGAAA--TCTCTGTCGTATACAATGGCAGAGTTCAACT 99221 Query 63853 TATCCTTATATTTGTTAACTATATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCC 63912 |||| || || | || | | ||||| ||||| || || | | || Sbjct 99220 CATCCGCATGCTTCATGACGGTCTTGTATGTGATGTCCGAAATCATAGGGCATTTCTTGT 99161 Query 63913 CATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttG 63972 || || || || | ||| | | | | || | || || || || | || || | Sbjct 99160 TGTTCTTTGGGTTGATATAATCGTAGAGGTCTTGGATGACAGCAGAGAACTGCTTCTTGG 99101 Query 63973 TTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTT 64032 ||| |||||| ||||| |||||||| || | || || || || || || || ||||| | Sbjct 99100 TTTGCTTGTGAAGATTCGATACGGCGATACGTGCTGCAAGGATTGCGTAGTCGGGATG-T 99042 Query 64033 GTGTAGTACAAGT-GGCTGCTATTTCGGCTGCCAGA 64067 ||| | || || |||||| | || || ||| || Sbjct 99041 GTGACGGTCATGTACGCTGCTGTCTCAGCGGCCTGA 99006 Score = 98.7 bits (108), Expect = 1e-15 Identities = 342/528 (65%), Gaps = 7/528 (1%) Strand=Plus/Minus Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054 ||||| || ||||| || || || | | || || || ||||||||||| || || ||| Sbjct 101135 GTGAACTGGATGGGTGCTGAAGCAGCCATGGTTCGGAGGTAGTACATTCCAGTCTTGAGA 101076 Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114 || | |||| || ||| ||||| || | ||| |||| ||| || Sbjct 101075 CCCATCTTCCAACCAGCAAAGTGCATGGAAGTAATCTTGCCCATGGTCGGCTCTTTCATG 101016 Query 62115 TGGATATTCATAGAT-TGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 62173 || || |||| || | ||| |||||| |||||||| || | || |||||||| | || Sbjct 101015 TGAATGTTCA-AGCTCTGAGATTGATCAATGAAGGCGCCACGATCCGCAGCCATGGTGAT 100957 Query 62174 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 62233 || || || |||||||||| || || |||| ||| ||||| || |||| Sbjct 100956 AATGGTACGCTGGCTGATTTCCCAAACCGTCTTGTAAAGGGCCTTGATATCATCGGGAAT 100897 Query 62234 GTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 62290 || | | ||||| || || ||||| ||||| || || | |||||| || | || Sbjct 100896 ATTAGGAATGTTCTGGATAGAACCACCCTCTGCAATGATACGATTCTTCATGTTGTCCGA 100837 Query 62291 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 62350 ||| | ||||| | | || | || || || || || ||||| ||||| || Sbjct 100836 CCAAAGACCCATCTCGACGAGATCTTTGAGCAGCCATGGGTTGACGACTTGGAATTCCCC 100777 Query 62351 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCC 62410 || | || | |||| ||| ||||| || || || || | |||| || || Sbjct 100776 AGCAAGCACACGACGAGAGTAGATATTTGACGTGTATGGCTCGAAGCACTCGTTGAAACC 100717 Query 62411 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA-TTTCTAAGAC 62469 | |||||||| || || ||||| |||||||| | || ||| || | || | || || Sbjct 100716 GAGAATTTGAGATGTGGAAGCAGTTGGCATAGGAG-CAACAAGAAGTGAGTTGCGAATAC 100658 Query 62470 CGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCG 62517 ||| | |||| | | | || || | ||||| | ||| ||||||| Sbjct 100657 CGTGCTTCTTGATATCAGCCTTGAGCGAGTCCCAGTCCCAGAGATCCG 100610 >seq549 Length=285283 Score = 82.4 bits (90), Expect = 1e-10 Identities = 174/258 (67%), Gaps = 5/258 (2%) Strand=Plus/Plus Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33660 || ||||| |||||||| ||||| || ||||| ||||| || |||| || || | || | Sbjct 207343 TCGGAATGGATGTTTTCCATGGCGATTTGAAAACCGTAAAAGCATCGGGCTTCTGGAACC 207402 Query 33661 TGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33720 || ||||| | | ||| ||||| | || || || || || || || ||||| Sbjct 207403 TGAACTTCGTTGCTAAAACGTTCGAGGAGGTTCTCGTTGACGATGCCATCCGATGCTGCG 207462 Query 33721 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA----GTTTATTCCA 33776 ||||| || | | ||| || ||| | |||||| | ||| | || ||||| Sbjct 207463 AAAAATGCGAGAATGTGTGAGATGAAAAAGCGTTCGTC-GTCGTTCAGGCGGTTGTTCCA 207521 Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836 || | ||||| || | ||| | ||||| | ||||||||||| ||| |||||| Sbjct 207522 GTCTGGAACGTCTTTGGAGAGATCGATCTCTTCGGCGGTCCAAAATGAGGCCATTGCCTT 207581 Query 33837 TTTATACATGTTCCAGAT 33854 || |||||| |||||| Sbjct 207582 CTTGTACATGCGCCAGAT 207599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622936197195080