Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148305.1_202016-10-31] 1,413 sequences; 60,939,407 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq782 123 3e-23 seq549 87.8 2e-12 >seq782 Length=233898 Score = 123 bits (136), Expect = 3e-23 Identities = 597/937 (64%), Gaps = 12/937 (1%) Strand=Plus/Minus Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051 |||||||||||| || | | || | | || ||||| || || | || ||||| | | Sbjct 99936 TTCGAACTCGTCACCGTAGATATCGGCAAGACCAGGGCACTCGTGAGGGCACATGAGAGT 99877 Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 63110 ||| || || | | | || || ||||| || || || |||||||| | || ||| | Sbjct 99876 CCAGTCGCCATTCTGTTCGACGCGCTTCATGAACAGGTCGGGAATCCACA-AGGCATAGA 99818 Query 63111 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63170 | ||||| | | | ||| || || || |||||| | ||||| | | | Sbjct 99817 AAAGATCACGAGCACGCGCTTCTTCTTTGCCGTGGTTCTTTCTCAGATCTAACCAGTTGA 99758 Query 63171 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63230 | ||| | ||||| || || | ||| ||||| | | ||||| || ||||| || | Sbjct 99757 AGACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAATGCACCAGGACGCTTGTTGCCAC 99698 Query 63231 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 63290 | ||||| | ||| | ||| || | | | || | | ||| |||| || ||| || | Sbjct 99697 CTTGATCAACGTAGCGAGCAGTCGCGTCAAAGACACGGAGCATAGGAACAAGACCGTTCG 99638 Query 63291 ATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGAC 63350 |||| || || || ||| || || |||| |||| || || | || || | Sbjct 99637 ATGTGCCGTTTGTTCCTCCAATGTATGATCCAGTGGCTCGGATGCGATGTATGTTAAGGC 99578 Query 63351 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 63410 | || || || || | || || || | || || || | || || ||||| |||| Sbjct 99577 CGATACCACCAGCGGTCTTTGAAATCATAGCACAAGTCTTGAGGGTGTCGTAGATACCCT 99518 Query 63411 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 63470 | || || || ||| || ||| || || || || || | ||| | || || | Sbjct 99517 CGATGCTGTCCTCCTTCGTGTCAATGAGGAAGCAAGACGAGAGTTGCGGTTGAGGTGTGC 99458 Query 63471 CCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGA-AAGTAGATTGTAC 63529 | || || || | ||||| || ||||| || || |||| | ||| | |||| ||||| Sbjct 99457 CTGCGTTGAAAAGTGTAGGGGAGGCGTGCGTGAAGTATTTGTTAGACATGTAG-TTGTAT 99399 Query 63530 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 63589 |||| || || || || || ||| | ||||| || ||||| |||||||| | ||| Sbjct 99398 GTCTGTATGGCAGATTCAATGTCCTCTCCGTGAATGCCGACTGCCACACGCATGATCATA 99339 Query 63590 TGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 63649 || || || | ||| ||| |||| | ||||| | | ||| ||| |||| ||| Sbjct 99338 TGTTGTGGACGCTCAGCGACCTTGCCGCTTATTCGGAGTAGGTATGATCGCTCCAGAGTC 99279 Query 63650 TTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTT 63707 || || ||||| || | ||| ||||| |||| ||||| | ||| | ||||| | | Sbjct 99278 TTGAAGCCAAAGTATTGGTAATTGAAA--TCTCTGTCGTATACAATGGCAGAGTTCAACT 99221 Query 63708 TATCCTTATATTTGTTAAC-TACATCCATGGTAATACTTGAAATAATAGGAAAATGTTTC 63766 |||| || || | || | | || || || ||||| ||||| | | || Sbjct 99220 CATCCGCATGCTTCATGACGGTCTTGTAT-GTGATGTCCGAAATCATAGGGCATTTCTTG 99162 Query 63767 CCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttttt 63826 || || || |||| ||| | | | | || | || || || || | || || Sbjct 99161 TTGTTCTTTGGGTTGATATAATCGTAGAGGTCTTGGATGACAGCAGAGAACTGCTTCTTG 99102 Query 63827 GTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGT 63886 |||| ||||| ||||| |||||||| || | || || || || || || || ||||| Sbjct 99101 GTTTGCTTGTGAAGATTCGATACGGCGATACGTGCTGCAAGGATTGCGTAGTCGGGATG- 99043 Query 63887 TGTGTAGTACAAGT-GGCTGCTATTTCGGCTGCCAGA 63922 |||| | || || |||||| | || || ||| || Sbjct 99042 TGTGACGGTCATGTACGCTGCTGTCTCAGCGGCCTGA 99006 Score = 102 bits (112), Expect = 1e-16 Identities = 343/528 (65%), Gaps = 7/528 (1%) Strand=Plus/Minus Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909 ||||| || ||||| || || || | | || || || ||||||||||| || || ||| Sbjct 101135 GTGAACTGGATGGGTGCTGAAGCAGCCATGGTTCGGAGGTAGTACATTCCAGTCTTGAGA 101076 Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969 || | |||| || ||| ||||| || | ||| |||| ||| || Sbjct 101075 CCCATCTTCCAACCAGCAAAGTGCATGGAAGTAATCTTGCCCATGGTCGGCTCTTTCATG 101016 Query 61970 TGGATATTCATAGAT-TGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 62028 || || |||| || | ||| |||||| |||||||| || | || |||||||| | || Sbjct 101015 TGAATGTTCA-AGCTCTGAGATTGATCAATGAAGGCGCCACGATCCGCAGCCATGGTGAT 100957 Query 62029 AATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 62088 ||| || || |||||||||| || || |||| ||| ||||| || |||| Sbjct 100956 AATGGTACGCTGGCTGATTTCCCAAACCGTCTTGTAAAGGGCCTTGATATCATCGGGAAT 100897 Query 62089 GTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 62145 || | | ||||| || || ||||| ||||| || || | |||||| || | || Sbjct 100896 ATTAGGAATGTTCTGGATAGAACCACCCTCTGCAATGATACGATTCTTCATGTTGTCCGA 100837 Query 62146 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 62205 ||| | ||||| | | || | || || || || || ||||| ||||| || Sbjct 100836 CCAAAGACCCATCTCGACGAGATCTTTGAGCAGCCATGGGTTGACGACTTGGAATTCCCC 100777 Query 62206 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 62265 || | || | |||| ||| ||||| || || || || | |||| || || Sbjct 100776 AGCAAGCACACGACGAGAGTAGATATTTGACGTGTATGGCTCGAAGCACTCGTTGAAACC 100717 Query 62266 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA-TTTCTAAGAC 62324 | |||||||| || || ||||| |||||||| | || ||| || | || | || || Sbjct 100716 GAGAATTTGAGATGTGGAAGCAGTTGGCATAGGAG-CAACAAGAAGTGAGTTGCGAATAC 100658 Query 62325 CGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCG 62372 ||| | |||| | | | || || | ||||| | ||| ||||||| Sbjct 100657 CGTGCTTCTTGATATCAGCCTTGAGCGAGTCCCAGTCCCAGAGATCCG 100610 >seq549 Length=285283 Score = 87.8 bits (96), Expect = 2e-12 Identities = 175/258 (68%), Gaps = 5/258 (2%) Strand=Plus/Plus Query 32958 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATC 33017 || ||||| |||||||| ||||| |||||||| ||||| ||||||| || || | || | Sbjct 207343 TCGGAATGGATGTTTTCCATGGCGATTTGAAAACCGTAAAAGCATCGGGCTTCTGGAACC 207402 Query 33018 TGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33077 || ||||| | | ||| ||||| | || || || || || || || ||||| Sbjct 207403 TGAACTTCGTTGCTAAAACGTTCGAGGAGGTTCTCGTTGACGATGCCATCCGATGCTGCG 207462 Query 33078 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA----GTTTATTCCA 33133 ||||| || | | ||| || ||| | |||||| | ||| | || ||||| Sbjct 207463 AAAAATGCGAGAATGTGTGAGATGAAAAAGCGTTCGTC-GTCGTTCAGGCGGTTGTTCCA 207521 Query 33134 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33193 || | ||||| || | ||| | ||||| | ||||||||||| ||| |||||| Sbjct 207522 GTCTGGAACGTCTTTGGAGAGATCGATCTCTTCGGCGGTCCAAAATGAGGCCATTGCCTT 207581 Query 33194 TTTATACATATTCCAGAT 33211 || ||||| |||||| Sbjct 207582 CTTGTACATGCGCCAGAT 207599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633620808474800