Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148305.1_202016-10-31] 1,413 sequences; 60,939,407 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq549 132 5e-26 seq859 89.7 5e-13 seq848 84.2 2e-11 >seq549 Length=285283 Score = 132 bits (146), Expect = 5e-26 Identities = 345/517 (67%), Gaps = 13/517 (3%) Strand=Plus/Minus Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATC-GAGAGCGACACCGC 52384 || || ||| | ||||| ||||| | |||||| |||||||||| | || |||| | | Sbjct 207214 GTCCCCTGCATCCGCAAGAAGGCCGACTGGGCACTGAAGTGGATTTGCGAT-GACAACTC 207156 Query 52385 CACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAG 52444 || | || ||| | || || ||||| |||||||| | || || |||| Sbjct 207155 TACCTTTGCATCGCGTCTCGTCGCATTCGCAGCTGTCGAGGGTATCTTCTTCAGCGGCGC 207096 Query 52445 CTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAA 52504 |||||| | ||||| | | || | | || | ||||||||| |||| ||| ||| Sbjct 207095 CTTTGCATCTATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCTTGACCTTCTCCAA 207036 Query 52505 CGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGAC 52564 ||| | || || |||||||| ||| ||||||| |||||||| |||||| || | Sbjct 207035 CGAACTTATCTCTCGCGACGAGGGAATGCACACCGACTTTGCCTGCCTCCTCTTCTCACA 206976 Query 52565 GCGCGTGACCGAAAAATTGGATTCG---GACACGATCCTGAGCATGTTCAAGGAGGCGGT 52621 || | || || || | |||| || | ||| ||| ||| ||||| || Sbjct 206975 GCTCA--AC--AAGAA--GCCTTCGCCTGAAGCCGTCCGCGCCATCATCACCGAGGCAGT 206922 Query 52622 GGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGC 52681 || || |||| || || | | || | ||| | |||| ||||||||| | Sbjct 206921 ACAAATTGAGCAGGAATTCTTGAGCGAAGCATTACCGTGCAGATTGCTCGGCATGAACTC 206862 Query 52682 GCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCA 52741 ||||||| |||||||||||||||| || |||||||| ||| | ||| || | Sbjct 206861 TACCCTCATGTGCCAGTACATCGAGTTTGTTGCTGATCGTCTCTTGCTTGCGCTTGGCAA 206802 Query 52742 -GCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGG 52800 | ||| || | |||||| ||| || || || || ||| | ||||| || |||| | Sbjct 206801 TGTCAAGGTT-TACAACGCCGTCAACCCCTTCGACTTCATGGAGAACATATCTCTTGCCG 206743 Query 52801 GCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 | ||||| ||||||||||||||||| ||||| || || Sbjct 206742 GAAAGACTAACTTTTTCGAGAAGCGCGTCGGTGATTA 206706 >seq859 Length=478526 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| || | ||| | || || || | | | |||||||| || |||||||||||||| Sbjct 225994 GCCGCCACGAAGACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGCT 225935 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||||| || || | || || |||| |||| || ||||| ||||| ||||| Sbjct 225934 CAGCGTACGTCCATCTTCCAACTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGG 225875 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564 |||||||| ||||| || | || || || | ||| || | |||||| | || || Sbjct 225874 AATACCTTCCTTGTC-CTGGATCTTCGTCTTGACGTTG-TCGATGGTGTCAGAGGATTCA 225817 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || | || | || || || || || || || || || || ||||| Sbjct 225816 ACTTCTAGTGTAATAGTCTTGCCGGTGAGGGTCTTCACGAAGATTTGCAT 225767 >seq848 Length=225143 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/183 (71%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 ||||||| |||||||||||||||| ||||| ||||| | ||| || || | | ||| Sbjct 108671 CCTTTTGGATGTTGTAGTCGCTCAAGGTACGTCCATCCTCCAATTGCTTTCCAGCAAAGA 108730 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGAT-TTTTTGTTTTAATTGT 138543 ||| ||||||||||| || || || || || ||||| ||| || | || |||| Sbjct 108731 TTAATCGCTGTTGGTCTGGCGGAATTCCCTCCTTGTCTTGGATCTTGGTCTTGACATTG- 108789 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 || | ||||| | ||||| ||||| | || | || || || || || ||||| || Sbjct 108790 TCGATAGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTTTTGACG 108849 Query 138604 AAA 138606 ||| Sbjct 108850 AAA 108852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496253634765360