Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148305.1_202016-10-31] 1,413 sequences; 60,939,407 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq859 104 2e-17 seq549 104 2e-17 seq848 82.4 7e-11 >seq859 Length=478526 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| || | || || || || || || ||||| ||| | Sbjct 225765 CCACCGCGGAGACGTAGAACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAC 225706 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || || || || || ||| ||||||| |||||||| || || || Sbjct 225705 AAGGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGTGGG 225646 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| || ||||| | |||| |||||| | ||| || Sbjct 225645 ATACCCTCCTTGTCCTGGATCTTGGTCTTGACATTGTCGATGGTGTCTGATGACTCAACC 225586 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || ||||| |||| ||| || || || || ||||| Sbjct 225585 TCCAAGGTGATGGTCTTGCCCGTCAAAGTCTTGACGAAGATTTGCAT 225539 >seq549 Length=285283 Score = 104 bits (114), Expect = 2e-17 Identities = 334/511 (65%), Gaps = 7/511 (1%) Strand=Plus/Minus Query 47070 CCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAACGTCACT 47129 |||||| | |||| |||||||| ||||| |||||| ||| | || ||| || Sbjct 207211 CCCTGCATCCGCAAGAAGGCCGACTGGGCACTGAAGTGGATTTGCGATGACAACTCTACC 207152 Query 47130 CTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTT 47189 | || ||| | |||| ||||| |||||||| |||||||| ||| |||| Sbjct 207151 TTTGCATCGCGTCTCGTCGCATTCGCAGCTGTCGAGGGTATCTTCTTCAGCGGCGCCTTT 207092 Query 47190 GCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAG 47249 || | || || | | || | || | ||||||||| | || || |||||| Sbjct 207091 GCATCTATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCTTGACCTTCTCCAACGAA 207032 Query 47250 CTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAACACTAGA 47309 || ||||| | ||||| || |||||||| |||||||||| ||| || | ||| || Sbjct 207031 CTTATCTCTCGCGACGAGGGAATGCACACCGACTTTGCCTGCCTCCTCTTCT-CAC-AGC 206974 Query 47310 GTCGATCAAAAG--TTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCA 47367 || | | ||| || | | || ||||| ||| ||| | |||| || || | Sbjct 206973 -TCAACAAGAAGCCTTCGCC-TGAAG-CCGTCCGCGCCATCATCACCGAGGCAGTACAAA 206917 Query 47368 TTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGA 47427 ||||| ||| || || ||| || | || || | || |||||| | Sbjct 206916 TTGAGCAGGAATTCTTGAGCGAAGCATTACCGTGCAGATTGCTCGGCATGAACTCTACCC 206857 Query 47428 TGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCA 47487 | ||| | |||||||||| ||||| || || || || | || ||| || || Sbjct 206856 TCATGTGCCAGTACATCGAGTTTGTTGCTGATCGTCTCTTGCTTGCGCTTGGCAATGTCA 206797 Query 47488 AGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGA 47547 || ||||| || ||| || || ||||| || ||| | ||||| || || | || |||| Sbjct 206796 AGGTTTACAACGCCGTCAACCCCTTCGACTTCATGGAGAACATATCTCTTGCCGGAAAGA 206737 Query 47548 CCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 | ||||||||||||||||||||||| || || Sbjct 206736 CTAACTTTTTCGAGAAGCGCGTCGGTGATTA 206706 >seq848 Length=225143 Score = 82.4 bits (90), Expect = 7e-11 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 ||||| || ||||| |||| || || || ||| || | || |||||||| |||| Sbjct 108673 TTTTGGATGTTGTAGTCGCTCAAGGTACGTCCATCCTCCAATTGCTTTCCAGCAAAGATT 108732 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 |||||||| || || || || || ||||||||||| ||| || ||||| | ||| Sbjct 108733 AATCGCTGTTGGTCTGGCGGAATTCCCTCCTTGTCTTGGATCTTGGTCTTGACATTGTCG 108792 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | ||||| | |||||| || | ||| | || ||||| || || ||||| || ||| Sbjct 108793 ATAGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTTTTGACGAAA 108852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475492401467120