Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148305.1_202016-10-31] 1,413 sequences; 60,939,407 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq549 149 6e-31 seq859 122 9e-23 seq848 109 5e-19 >seq549 Length=285283 Score = 149 bits (164), Expect = 6e-31 Identities = 202/281 (72%), Gaps = 3/281 (1%) Strand=Plus/Plus Query 133171 GTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCG 133230 || ||||| ||| || || | || || || | ||| ||||||||||||||||| ||| Sbjct 207319 GTCTCGATCAGGAGGGAGTATGTCTCGGAATGGATGTTTTCCATGGCGATTTGAAAACCG 207378 Query 133231 TAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCG 133290 |||||||| || || || ||||| ||||| | ||||| |||| || || ||| Sbjct 207379 TAAAAGCATCGGGCTTCTGGAACCTGAACTTCGTTGCTAAAACGTTCGAGGAGGTTCTCG 207438 Query 133291 TTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCG 133350 ||||||||||| || || |||||||| || || | ||| ||||||| ||| ||| Sbjct 207439 TTGACGATGCCATCCGATGCTGCGAAAAATGCGAGAATGTGTGAGATGAAAAAGCGTTCG 207498 Query 133351 TTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACG 133407 | |||||||| ||| | |||||| | ||| ||||| || || | ||| ||| || Sbjct 207499 TCGTCGTTCAGGCGGTTGTTCCAGTCTGGAACGTCTTTGGAGAGATCGATCTCTTCGGCG 207558 Query 133408 GTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACAT 133448 |||||||| || ||| || || |||||||| | ||| || Sbjct 207559 GTCCAAAATGAGGCCATTGCCTTCTTGTACATGCGCCAGAT 207599 Score = 107 bits (118), Expect = 2e-18 Identities = 116/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 ||| ||||||||| |||| |||||||| | || || ||||||||| ||| ||||| Sbjct 206990 GCAGGCAAAGTCGGTGTGCATTCCCTCGTCGCGAGAGATAAGTTCGTTGGAGAAGGTCAA 207049 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 |||||||||||| ||||| || |||||||| || || | || || ||| ||||| Sbjct 207050 GCCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATAGATGCAAAGGCGCCGCTGAAGAA 207109 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGC 133047 || |||||||| || ||||| || || || ||| Sbjct 207110 GATACCCTCGACAGCTGCGAATGCGACGAGACGC 207143 >seq859 Length=478526 Score = 122 bits (134), Expect = 9e-23 Identities = 167/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| ||||| || || || | || || || || | Sbjct 225767 ATGCAAATCTTCGTGAAGACCCTCACCGGCAAGACTATTACACTAGAAGTTGAATCCTCT 225826 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | |||| | |||| || |||| ||||| || || ||||| | |||| Sbjct 225827 GACACCATCGACAACG--TCAAGACGAAGATCCAGGACAAGGAAGGTATTCCTCCAGACC 225884 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| ||||| | ||| || || ||| |||| || | || || || | |||||||| Sbjct 225885 AGCAGCGCCTCATCTTCGCCGGAAAGCAGTTGGAAGATGGACGTACGCTGAGCGACTACA 225944 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| ||||| |||| |||| |||||||| ||| | | |||||| Sbjct 225945 ACATCCAGAAGGAGTCGACCTTGCACTTGGTGCTCCGTCTTCGTGGCGGC 225994 Score = 109 bits (120), Expect = 5e-19 Identities = 157/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | |||||||| ||||||||| | || || ||| | | Sbjct 225539 ATGCAAATCTTCGTCAAGACTTTGACGGGCAAGACCATCACCTTGGAGGTTGAGTCATCA 225598 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | || | | |||| || |||| ||||| ||||| || || | |||| Sbjct 225599 GACACCATCGACAATG--TCAAGACCAAGATCCAGGACAAGGAGGGTATCCCACCAGACC 225656 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| | || | ||| ||||| || || || || | |||||| | |||||||| Sbjct 225657 AGCAGCGCTTGATCTTCGCCGGCAAGCAACTCGAAGATGGCCGCACCTTGTCCGACTACA 225716 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||| |||||| | || || || ||||| || ||| Sbjct 225717 ACATCCAGAAGGAATCCACTCTCCACTTGGTTCTACGT 225754 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/169 (73%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 || || || || |||||| | || || ||| ||| ||||| | | | |||| | |||| Sbjct 225335 ACCGGAAAGACGATCACCCTTGAGGTTGAGTCCAGCGACACCATCGACAACG--TCAAGA 225392 Query 38327 AAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385 || || | ||||| |||||||| || | ||||| ||||| | || | ||| |||| Sbjct 225393 CCAAGATTCAAGACAAGGAGGGAATCCCACCAGACCAGCAGCGCTTGATCTTCGCCGGCA 225452 Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434 | ||||| || || | || |||||| ||||||||||||||| ||||| Sbjct 225453 AGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAGGA 225501 >seq848 Length=225143 Score = 109 bits (120), Expect = 5e-19 Identities = 136/183 (74%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| ||||| ||||||||||| ||||||||| | || |||||| || | |||| | Sbjct 108851 TTCGTCAAAACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCTGACACTATC 108792 Query 38313 CA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGC 38370 | || | | |||| || |||| ||||| ||||||||||| | ||||||||||| Sbjct 108791 GACAATG--TCAAGACCAAGATCCAAGACAAGGAGGGAATTCCGCCAGACCAACAGCGAT 108734 Query 38371 TCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAA 38430 | || | || || || || |||| || | || ||| | | ||||||||||||||||| Sbjct 108733 TAATCTTTGCTGGAAAGCAATTGGAGGATGGACGTACCTTGAGCGACTACAACATCCAAA 108674 Query 38431 AGG 38433 ||| Sbjct 108673 AGG 108671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500163965697920