Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148305.1_202016-10-31] 1,413 sequences; 60,939,407 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq782 176 6e-39 seq549 131 2e-25 seq413 102 1e-16 >seq782 Length=233898 Score = 176 bits (194), Expect = 6e-39 Identities = 417/627 (67%), Gaps = 11/627 (2%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 ||||| | ||| ||||||| || || |||| || || || || || ||||| |||| Sbjct 99331 CCACAACATATGATCATGCGTGTGGCAGTCGGCATTCACGGAGAGGACATTGAATCTGCC 99390 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 | |||||||| || | ||||| |||| ||||| | || || || ||| Sbjct 99391 ATACAGACATACAACTACATGTCTAACAAATACTTCACGCACGCCTCCCCTACACTTTTC 99450 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||| || ||||| ||| ||| | || ||| ||||| |||| | |||||||| Sbjct 99451 AACGCAGGCACACCTCAACCGCAACTCTCGTCTTGCTTCCTCATTGACACGAAGGAGGAC 99510 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 ||| | || || |||| ||| |||| ||||| || |||||| |||||| Sbjct 99511 AGCATCGAGGGTATCTACGACACCCTCAAGACTTGTGCTATGATTTCAAAGACCGCTGGT 99570 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAAT 111911 |||||||| | |||| ||| || |||||| || ||| |||| ||||| Sbjct 99571 GGTATCGGCCTTAACATACATCGCATCCGAGCCACTGGATCATACATTGGAGGAACAAAC 99630 Query 111912 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 111971 || ||| | ||| || |||| ||||| || || ||| |||| || || ||||| || Sbjct 99631 GGCACATCGAACGGTCTTGTTCCTATGCTCCGTGTCTTTGACGCGACTGCTCGCTACGTT 99690 Query 111972 AACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 112025 | |||| ||| ||||| || | |||| |||| || |||||||||||| Sbjct 99691 GATCAAGGTGGCAACAAGCGTC---CTGGTGCATTCGCCATCTACCTCGAGCCATGGCAC 99747 Query 112026 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC 112085 || ||| || | | | | || || | ||||| || | || || |||| |||| Sbjct 99748 GCCGATGTCTTCAACTGGTTAGATCTGAGAAAGAACCACGGCAAAGAAGAAGCGC-GTGC 99806 Query 112086 -CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 112144 || ||||| |||| || | |||||||| || || ||||||||| | || || ||| Sbjct 99807 TCGTGATCTTTTCTATGCCTTGTGGATTCCCGACCTGTTCATGAAGCGCGTCGAACAGAA 99866 Query 112145 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGA 112204 |||| | ||| ||||| | || || || || || ||||| ||||| | ||||| Sbjct 99867 TGGCGACTGGACTCTCATGTGCCCTCACGAGTGCCCTGGTCTTGCCGATATCTACGGTGA 99926 Query 112205 GGAGTTTGAAGCCCTCTACACAAAGTA 112231 ||||| ||||| |||||| ||||| Sbjct 99927 CGAGTTCGAAGCTCTCTACGAGAAGTA 99953 Score = 167 bits (184), Expect = 3e-36 Identities = 492/746 (66%), Gaps = 18/746 (2%) Strand=Plus/Plus Query 112605 CACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCAC 112664 |||||||| | ||| | ||||| || ||||| || |||| ||| || | ||||| Sbjct 100375 CACCGTCCCGTCGGTGTTGGTGTACAGGGTCTTGCTGATGCTTTCCTTGCTCTTCGCCTG 100434 Query 112665 GCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCAC 112724 | || || || ||| || ||| | |||| | || || ||||| || || || Sbjct 100435 CCCTTCGAGTCTCCCGAGGCAAAGAAGCTCAACATTCAAATCTTCGAGACCATTTACCAT 100494 Query 112725 GCCGCTCTTGAGGCGAGTTCGG--AGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTG 112782 ||||| ||||| | | | | || | ||| | | || || |||| |||||| | Sbjct 100495 GCCGC-CTTGAC-CTCTTCCTGCAAGCTTGCACAAGAAGAAGGCACATACAAAACCTACG 100552 Query 112783 AGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAA-G 112841 |||| ||||||| ||| || || | || || | || |||||| || || | || | | Sbjct 100553 AGGGCTCTCCAGTTTCCCAGGGTATTCTCCAGTACGACATGTGG-AACGTCACTCCTACG 100611 Query 112842 CTTCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGT 112901 || || ||||||||| | ||||||| |||||| || | ||| |||| ||| Sbjct 100612 GATCTCTGGGACTGGGACTCGCTCAAGGCTGATATCAAGAAGCACGGTATTCGCAACTCA 100671 Query 112902 CTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGC 112961 ||| | | || || |||||||| || ||||| | ||||| | ||| || || ||| Sbjct 100672 CTTCTTGTTGCTCCTATGCCAACTGCTTCCACATCTCAAATTCTCGGTTTCAACGAGTGC 100731 Query 112962 TTTGAACCCTACACGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTTGTGAT 113020 || || || |||||| | || ||||| ||| | | || || || || || | Sbjct 100732 TTCGAGCCATACACGTCAAATATCTACTCTC-GTCGTGTGCTTGCTGGGGAATTCCAAGT 100790 Query 113021 TGTCAACAAGCAT--CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATG 113078 |||||| ||| || | | || ||| ||||| ||||| ||||| | | ||| Sbjct 100791 CGTCAACC--CATGGCTGCTCAAAGATCTCGTCGAGATGGGTCTTTGGTCGGACAACATG 100848 Query 113079 AAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAA 113138 ||| ||| || | || ||||||||| || || || ||| ||||||| ||||| Sbjct 100849 AAGAATCGTATCATTGCAGAGGGTGGTTCTATCCAGAACATTCCTAATATTCCCGATGAT 100908 Query 113139 ATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACA---TG 113195 || ||| | ||| || ||||||||||||| || | |||| || || Sbjct 100909 ATCAAGGCCCTTTACAAGACGGTTTGGGAAATCAGCC---AGCGTACCATTATCACCATG 100965 Query 113196 GCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGT 113255 || || |||||||| ||||||||||||| ||| || |||| | |||| || Sbjct 100966 GCTGCGGATCGTGGCGCCTTCATTGATCAATCTCAGAGCTTGAACATTCACATGAAAGAG 101025 Query 113256 CCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACG 113315 || || ||| |||| | |||| |||||| | ||||||||| ||||||||| || Sbjct 101026 CCGACCATGGGCAAGATTACTTCCATGCACTTTGCTGGTTGGAAGATGGGTCTCAAGACT 101085 Query 113316 GGGATGTATTACCTCCGATCTAAGGC 113341 || ||||| ||||||||| | | ||| Sbjct 101086 GGAATGTACTACCTCCGAACCATGGC 101111 >seq549 Length=285283 Score = 131 bits (144), Expect = 2e-25 Identities = 167/226 (74%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAGTC 102166 ||| || || || | ||||| || || ||||| |||||||| || ||| || || Sbjct 207215 AGTCCCCTGCATCCGCAAGAAGGCCGACTGGGCACTGAAGTGGATTTGCGATGACAACTC 207156 Query 102167 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 102226 | ||||||| ||| ||| ||||||| || ||| ||||||||||||||| || Sbjct 207155 ---TACCTTTGCATCGCGTCTCGTCGCATTCGCAGCTGTCGAGGGTATCTTCTTCAGCGG 207099 Query 102227 TTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 102285 |||| ||| |||| | |||||||||||||| ||||||||||| || | ||||| Sbjct 207098 CGCCTT-TGCATCTATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCTTGACCTTCT 207040 Query 102286 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||||| ||||||||||| ||||||||| | ||| || ||||| Sbjct 207039 CCAACGAACTTATCTCTCGCGACGAGGGAATGCACACCGACTTTGC 206994 >seq413 Length=134486 Score = 102 bits (112), Expect = 1e-16 Identities = 247/367 (67%), Gaps = 23/367 (6%) Strand=Plus/Minus Query 15936 TTCGTTGCGGCGATGACAACAATACCTGTTTCGT--TATCAAAACCATCCATCTCTGTCA 15993 ||||| | || || || |||| |||||| ||| | | ||||||||||| ||||||| Sbjct 31109 TTCGTACCCGCAATAACCACAA--CCTGTTCCGTGGTGTTGAAACCATCCATTTCTGTCA 31052 Query 15994 AAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTT 16053 | |||||| | || ||||||||||||||| | ||| ||| || || Sbjct 31051 GGATCTGGTTGAGCGTGCTTTCCCGTTCATCATTTCC------ACCGCCAAAGTTGTTTT 30998 Query 16054 GC--------TTTCCCAC-GGCATCAATCTCATCAATGAAGACGATGCATGGT-TGATTT 16103 | ||||||| ||| || || ||||||||||| | |||||| ||| || | | Sbjct 30997 TCGATCTCGATTTCCCAATGGCGTCGATTTCATCAATGAAAATGATGCAAGGTGTGTTCT 30938 Query 16104 TCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCC 16163 || | ||| | || ||||| || ||||| | || ||||| |||||||||||| Sbjct 30937 TC-CTCGCGGTGGCGAACAGATCTCGAACACGAGATGGACCGACACCCACAAACATCTCC 30879 Query 16164 ACAAAGTTTGCGGCG-GAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCG 16222 || || | | | || ||| | || ||| || ||| |||||| || || | ||| Sbjct 30878 ACGAACTCAGAGCCGCTCACACT-GAAGAATGGAACACCAGATTCGCCAGCTGTTGCTTT 30820 Query 16223 GGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTT 16282 |||||| || ||||| || || || || || | || | |||||| || |||||||| Sbjct 30819 GGCGAGCAGCGTCTTGCCAGTTCCAGGAGGCCCAGAAAGAATGGCACCGCGAGGAATCTT 30760 Query 16283 GGCGCCA 16289 || ||| Sbjct 30759 CGCACCA 30753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620731436137360