Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148305.1_202016-10-31] 1,413 sequences; 60,939,407 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq782 141 1e-28 seq640 102 1e-16 >seq782 Length=233898 Score = 141 bits (156), Expect = 1e-28 Identities = 314/464 (68%), Gaps = 18/464 (4%) Strand=Plus/Minus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467 || || || ||||| || || |||||||| |||||| | | ||||| |||| Sbjct 101102 CGGAGGTAGTACATTCCAGTCTTGAGACCCATCTTCCAACCAGCAAAGTGCATGGAAGTA 101043 Query 109468 AGTTTGGAAAGTGTCGGACTCTC-CATAAACAAGTTCATCGACTGAGACTGATCGATGAA 109526 | ||| | ||||| |||| ||| | ||||| |||||| ||||| ||||| Sbjct 101042 ATCTTGCCCATGGTCGG-CTCTTTCATGTGAATGTTCAAGCTCTGAGATTGATCAATGAA 100984 Query 109527 TCGACCACGATCAGCCGCCATGTCGATGAT---ACACTTTTGGCTAATTTCCCAGACAGT 109583 |||||||| || |||||| ||| || || || |||| |||||||| || || Sbjct 100983 GGCGCCACGATCCGCAGCCATGGTGATAATGGTACGCT---GGCTGATTTCCCAAACCGT 100927 Query 109584 CTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGC 109643 |||||| | |||||||||||||||||| | ||||| || ||||| |||| | Sbjct 100926 CTTGTAAAGGGCCTTGATATCATCGGGAATATTAGGAATGTTCTGGATAGA---ACCACC 100870 Query 109644 CTTCACCATGA---GATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTC 109700 || | |||| ||| |||||| | | |||||| ||||| | || |||||| | Sbjct 100869 CTCTGCAATGATACGATTCTTCATGTTGTCCGACCAAAGACCCATCTCGACGAGATCTTT 100810 Query 109701 AACAAG--ATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATG 109758 | || ||| |||||| || ||||| |||||||| || || |||||| Sbjct 100809 GAGCAGCCATG--GGTTGACGACTTGGAATTCCCCAGCAAGCACACGACGAGAGTAGATA 100752 Query 109759 TTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTG 109818 || | |||||| || ||||| ||||| ||| || || ||||| | |||||||| || Sbjct 100751 TTTGACGTGTATGGCTCGAAGCACTCGTTGAAACCGAGAATTTGAGATGTGGAAGCAGTT 100692 Query 109819 GGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTT 109862 ||||| ||||| | ||||| ||| || | ||| | | |||| Sbjct 100691 GGCATAGGAGCAACAAGAAGTGAGTTGCGAATACCGTGCTTCTT 100648 Score = 125 bits (138), Expect = 8e-24 Identities = 390/599 (65%), Gaps = 15/599 (3%) Strand=Plus/Minus Query 110545 CCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCC 110604 ||||| | ||| | |||||| || || || || | ||| | ||| | ||| | Sbjct 99923 CCGTAGATATCGGCAAGACCAGGGCACTCGTGAGGGCACATGAGAGTCCAGTCGCCATTC 99864 Query 110605 TCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAA 110664 | || || | ||||||||||||||| |||||||||| || ||||||| ||||| | Sbjct 99863 TGTTCGACGCGCTTCATGAACAGGTCGGGAATCCACAAGGCATAGAAAAGATCACGAGCA 99804 Query 110665 CGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGC 110724 || || ||||| | || ||||| | || || || ||| | || ||| | |||| Sbjct 99803 CGCGCTTCTTCTTTGCCGTGGTTCTTTCTCAGATCTAACCAGTTGAAGACATCGGCGTGC 99744 Query 110725 CATGGTTCGAGATAGACAGCGATGGATCCCTTACGACG------ACCCGCCTGGTTAACA 110778 ||||| ||||| |||| |||| || | | |||| || | || | ||| Sbjct 99743 CATGGCTCGAGGTAGATGGCGA---ATGCACCAGGACGCTTGTTGCCACCTTGATCAACG 99687 Query 110779 TAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTT 110838 ||||| || || || | ||||| | ||||||||||| || || | ||| || ||| Sbjct 99686 TAGCGAGCAGTCGCGTCAAAGACACGGAGCATAGGAACAAGACCGTTCGATGTGCCGTTT 99627 Query 110839 GTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCC 110898 || || | ||| || | |||| || ||| || || | | || |||||||| Sbjct 99626 GTTCCTCCAATGTATGATCCAGTGGCTCGGATGCGATGTATGTTAAGGCCGATACCACCA 99567 Query 110899 GCCCACTTACTAATTTGTGCAC-ACTCTGTGAGTGTACCATAAATACCATCAATCGAATC 110957 || ||| ||| |||| | ||| |||| || | || ||||| || || || Sbjct 99566 GCGGTCTTTGAAATCATAGCACAAGTCT-TGAGGGTGTCGTAGATACCCTCGATGCTGTC 99508 Query 110958 TGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAA 111017 |||| || |||| || |||||||| || | || || |||| || || || ||||| Sbjct 99507 CTCCTTCGTGTCAATGAGGAAGCAAGACGAGAGTTGCGGTTGAGGTGTGCCTGCGTTGAA 99448 Query 111018 GAGTGTAGGTGTCGCATGAATGAACAGACCTTG--GGACATCTTGTTGTATGTGTCGAGT 111075 |||||||| | || || ||| || ||| ||||| | ||||||||| | | Sbjct 99447 AAGTGTAGGGGAGGCGTGCGTGA--AGTATTTGTTAGACATGTAGTTGTATGTCTGTATG 99390 Query 111076 GCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGG 111134 || || | || | |||||||| || | || || ||||||| ||||| ||| || Sbjct 99389 GCAGATTCAATGTCCTCTCCGTGAATGCCGACTGCCACACGCATGATCATATGTTGTGG 99331 >seq640 Length=59877 Score = 102 bits (112), Expect = 1e-16 Identities = 211/314 (67%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 11683 GCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGT 11742 ||||| | ||| |||||||| | ||| || |||| || || | | ||||||| Sbjct 49847 GCGTCCAACTCGTCGATGAAAATGATGGCAGGAGACTTGGTGCGAGCGTTTGTGAAAAGT 49788 Query 11743 TCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAACAC 11802 || || |||||||||||||| ||||| || ||||||| |||| | || ||||| Sbjct 49787 TCCCGAACACGCTTCGCTCCGACACCGACATACATCTCGTCGAATTCTGATCCAGAAGCA 49728 Query 11803 TGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTA 11862 | || ||| || ||| || || ||||||| |||| || || ||||| ||||| || Sbjct 49727 TAAAAGAACGGGACACCAGCTTCGCCAGCGACTGCTCTTGCCAGCAGAGTTTTACCAGTT 49668 Query 11863 CCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAGTAGCGC 11922 ||||||| ||| | || || | || ||| | |||| | || | || | | Sbjct 49667 CCAGGTGGGCCAACAAGCAGAACACCTTTGGGAAGCTTGCCGCCCAGTGTCGAGAATTGT 49608 Query 11923 TCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCGATACCC 11982 | ||| | || ||||| |||||| || | | || |||||||| |||| ||| Sbjct 49607 TTAGGGTCTTTTAGGAATGCCACAAGTTCTTGCAACTCTTCCTTGGCTTCGTCGCAACCT 49548 Query 11983 TCAACATCGGTGAA 11996 || |||||| |||| Sbjct 49547 TCCACATCGCTGAA 49534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588965597211400