Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148305.1_202016-10-31]
1,413 sequences; 60,939,407 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq782 141 1e-28
seq640 102 1e-16
>seq782
Length=233898
Score = 141 bits (156), Expect = 1e-28
Identities = 314/464 (68%), Gaps = 18/464 (4%)
Strand=Plus/Minus
Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467
|| || || ||||| || || |||||||| |||||| | | ||||| ||||
Sbjct 101102 CGGAGGTAGTACATTCCAGTCTTGAGACCCATCTTCCAACCAGCAAAGTGCATGGAAGTA 101043
Query 109468 AGTTTGGAAAGTGTCGGACTCTC-CATAAACAAGTTCATCGACTGAGACTGATCGATGAA 109526
| ||| | ||||| |||| ||| | ||||| |||||| ||||| |||||
Sbjct 101042 ATCTTGCCCATGGTCGG-CTCTTTCATGTGAATGTTCAAGCTCTGAGATTGATCAATGAA 100984
Query 109527 TCGACCACGATCAGCCGCCATGTCGATGAT---ACACTTTTGGCTAATTTCCCAGACAGT 109583
|||||||| || |||||| ||| || || || |||| |||||||| || ||
Sbjct 100983 GGCGCCACGATCCGCAGCCATGGTGATAATGGTACGCT---GGCTGATTTCCCAAACCGT 100927
Query 109584 CTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGC 109643
|||||| | |||||||||||||||||| | ||||| || ||||| |||| |
Sbjct 100926 CTTGTAAAGGGCCTTGATATCATCGGGAATATTAGGAATGTTCTGGATAGA---ACCACC 100870
Query 109644 CTTCACCATGA---GATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTC 109700
|| | |||| ||| |||||| | | |||||| ||||| | || |||||| |
Sbjct 100869 CTCTGCAATGATACGATTCTTCATGTTGTCCGACCAAAGACCCATCTCGACGAGATCTTT 100810
Query 109701 AACAAG--ATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATG 109758
| || ||| |||||| || ||||| |||||||| || || ||||||
Sbjct 100809 GAGCAGCCATG--GGTTGACGACTTGGAATTCCCCAGCAAGCACACGACGAGAGTAGATA 100752
Query 109759 TTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTG 109818
|| | |||||| || ||||| ||||| ||| || || ||||| | |||||||| ||
Sbjct 100751 TTTGACGTGTATGGCTCGAAGCACTCGTTGAAACCGAGAATTTGAGATGTGGAAGCAGTT 100692
Query 109819 GGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTT 109862
||||| ||||| | ||||| ||| || | ||| | | ||||
Sbjct 100691 GGCATAGGAGCAACAAGAAGTGAGTTGCGAATACCGTGCTTCTT 100648
Score = 125 bits (138), Expect = 8e-24
Identities = 390/599 (65%), Gaps = 15/599 (3%)
Strand=Plus/Minus
Query 110545 CCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCC 110604
||||| | ||| | |||||| || || || || | ||| | ||| | ||| |
Sbjct 99923 CCGTAGATATCGGCAAGACCAGGGCACTCGTGAGGGCACATGAGAGTCCAGTCGCCATTC 99864
Query 110605 TCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAA 110664
| || || | ||||||||||||||| |||||||||| || ||||||| ||||| |
Sbjct 99863 TGTTCGACGCGCTTCATGAACAGGTCGGGAATCCACAAGGCATAGAAAAGATCACGAGCA 99804
Query 110665 CGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGC 110724
|| || ||||| | || ||||| | || || || ||| | || ||| | ||||
Sbjct 99803 CGCGCTTCTTCTTTGCCGTGGTTCTTTCTCAGATCTAACCAGTTGAAGACATCGGCGTGC 99744
Query 110725 CATGGTTCGAGATAGACAGCGATGGATCCCTTACGACG------ACCCGCCTGGTTAACA 110778
||||| ||||| |||| |||| || | | |||| || | || | |||
Sbjct 99743 CATGGCTCGAGGTAGATGGCGA---ATGCACCAGGACGCTTGTTGCCACCTTGATCAACG 99687
Query 110779 TAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTT 110838
||||| || || || | ||||| | ||||||||||| || || | ||| || |||
Sbjct 99686 TAGCGAGCAGTCGCGTCAAAGACACGGAGCATAGGAACAAGACCGTTCGATGTGCCGTTT 99627
Query 110839 GTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCC 110898
|| || | ||| || | |||| || ||| || || | | || ||||||||
Sbjct 99626 GTTCCTCCAATGTATGATCCAGTGGCTCGGATGCGATGTATGTTAAGGCCGATACCACCA 99567
Query 110899 GCCCACTTACTAATTTGTGCAC-ACTCTGTGAGTGTACCATAAATACCATCAATCGAATC 110957
|| ||| ||| |||| | ||| |||| || | || ||||| || || ||
Sbjct 99566 GCGGTCTTTGAAATCATAGCACAAGTCT-TGAGGGTGTCGTAGATACCCTCGATGCTGTC 99508
Query 110958 TGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAA 111017
|||| || |||| || |||||||| || | || || |||| || || || |||||
Sbjct 99507 CTCCTTCGTGTCAATGAGGAAGCAAGACGAGAGTTGCGGTTGAGGTGTGCCTGCGTTGAA 99448
Query 111018 GAGTGTAGGTGTCGCATGAATGAACAGACCTTG--GGACATCTTGTTGTATGTGTCGAGT 111075
|||||||| | || || ||| || ||| ||||| | ||||||||| | |
Sbjct 99447 AAGTGTAGGGGAGGCGTGCGTGA--AGTATTTGTTAGACATGTAGTTGTATGTCTGTATG 99390
Query 111076 GCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGG 111134
|| || | || | |||||||| || | || || ||||||| ||||| ||| ||
Sbjct 99389 GCAGATTCAATGTCCTCTCCGTGAATGCCGACTGCCACACGCATGATCATATGTTGTGG 99331
>seq640
Length=59877
Score = 102 bits (112), Expect = 1e-16
Identities = 211/314 (67%), Gaps = 0/314 (0%)
Strand=Plus/Minus
Query 11683 GCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGT 11742
||||| | ||| |||||||| | ||| || |||| || || | | |||||||
Sbjct 49847 GCGTCCAACTCGTCGATGAAAATGATGGCAGGAGACTTGGTGCGAGCGTTTGTGAAAAGT 49788
Query 11743 TCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAACAC 11802
|| || |||||||||||||| ||||| || ||||||| |||| | || |||||
Sbjct 49787 TCCCGAACACGCTTCGCTCCGACACCGACATACATCTCGTCGAATTCTGATCCAGAAGCA 49728
Query 11803 TGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTA 11862
| || ||| || ||| || || ||||||| |||| || || ||||| ||||| ||
Sbjct 49727 TAAAAGAACGGGACACCAGCTTCGCCAGCGACTGCTCTTGCCAGCAGAGTTTTACCAGTT 49668
Query 11863 CCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAGTAGCGC 11922
||||||| ||| | || || | || ||| | |||| | || | || | |
Sbjct 49667 CCAGGTGGGCCAACAAGCAGAACACCTTTGGGAAGCTTGCCGCCCAGTGTCGAGAATTGT 49608
Query 11923 TCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCGATACCC 11982
| ||| | || ||||| |||||| || | | || |||||||| |||| |||
Sbjct 49607 TTAGGGTCTTTTAGGAATGCCACAAGTTCTTGCAACTCTTCCTTGGCTTCGTCGCAACCT 49548
Query 11983 TCAACATCGGTGAA 11996
|| |||||| ||||
Sbjct 49547 TCCACATCGCTGAA 49534
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588965597211400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |