Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148305.1_202016-10-31] 1,413 sequences; 60,939,407 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq782 192 7e-44 seq549 93.3 5e-14 >seq782 Length=233898 Score = 192 bits (212), Expect = 7e-44 Identities = 1137/1801 (63%), Gaps = 91/1801 (5%) Strand=Plus/Minus Query 105581 GCCTTAGATCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGC 105640 ||| | | |||||| |||||||| || |||||||| || ||||| | | ||| Sbjct 101111 GCCATGGTTCGGAGGTAGTACATTCCAGTCTTGAGACCCATCTTCCAACCAGCAAAGTGC 101052 Query 105641 ATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGG 105700 || |||| | |||| ||| || || || |||| || |||| || ||| || Sbjct 101051 ATGGAAGTAATCTTGCCCATGGTCGGCTCTTTCATGTGAATGTTCAAGCTCTGAGATTGA 100992 Query 105701 TCAATGAAGCGACCACGTTGTGCCGCCAT----ATCAATGACATCCTTCATCTTGATTTC 105756 ||||||||| ||||| | || ||||| || |||| | || | |||||| Sbjct 100991 TCAATGAAGGCGCCACGATCCGCAGCCATGGTGAT-AATGGTACGCTGGCT---GATTTC 100936 Query 105757 CCACACTGTGCGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGA 105816 ||| || || ||| || |||||||||||| || |||| | || || || || || Sbjct 100935 CCAAACCGTCTTGTAAAGGGCCTTGATATCATCGGGAATATTAGGAATGTTCTGGATAGA 100876 Query 105817 ACCCCCCGCCTTGACCATGA---GATCCTTCATATCCTTGGACCAAAGACCAATCTTCTT 105873 ||| ||| | || | |||| ||| |||||| | | ||||||||||| |||| Sbjct 100875 ACCACCCTC--TG-CAATGATACGATTCTTCATGTTGTCCGACCAAAGACCCATCTCGAC 100819 Query 105874 GAGATCATTGACGAG--ATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTC 105931 |||||| |||| || ||| |||||| | || || || || || | | Sbjct 100818 GAGATCTTTGAGCAGCCATGG--GTTGACGACTTGGAATTCCCCAGCAAGCACACGACG- 100762 Query 105932 AGA-TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGT 105990 ||| ||||| || | |||||| || || ||||| || || ||| | ||||| | || Sbjct 100761 AGAGTAGATATTTGACGTGTATGGCTCGAAGCACTCGTTGAAACCGAGAATTTGAGATGT 100702 Query 105991 GGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCG 106050 ||| || |||||||| || || | | ||| ||| |||| ||| | | |||||| Sbjct 100701 GGAAGCAGTTGGCATAGGAGCAACAAGAAGTGAGTTGCGAATACCGTGCTTCTTGATATC 100642 Query 106051 TTCCTTGAGAACATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATATCAAAT 106108 ||||||| |||||||| || || | | || | || |||| |||| || | Sbjct 100641 AGCCTTGAGCGAGTCCCAGTCCCAGA-GATCCGTAGGAGTGACGTTCC-ACATGTCGTAC 100584 Query 106109 TGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCA 106168 || || | || ||||| ||||| ||||| | || | || | |||| ||| Sbjct 100583 TGGAGAATACCCTGGGAAACTGGAGAGCCCTCGTAGGTTTTGTATGTGCCTTCTTCTTGT 100524 Query 106169 GCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTC 106228 || | | ||| | || || || || || ||||| || ||||| || || Sbjct 100523 GCAAGCTTGCAGGAAGAGGTCAAGGCGGCATGGTAAATGGTCTCGAAGATTTGAATGTTG 100464 Query 106229 ATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAA-AATAAATACATCCGCGAG 106287 | || ||| || || || || || | | || | | | || || |||| || || Sbjct 100463 AGCTTCTTTGCCTCGGGAGACTCGAAGG-GCAGGCGAAGAGCAAGGAAAGCATCAGCAAG 100405 Query 106288 ACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAAC 106347 ||| || ||||| | ||| | || | ||| || || || || ||| Sbjct 100404 ACCCTGTACACCAACACCGACGGGACGGTGACGGGAGTTGCTGTTGTATGCTTCGGGAAC 100345 Query 106348 GGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTC 106407 |||||| || |||||||| ||| | || | ||| ||| || ||| Sbjct 100344 GGGATAGTGGTTGACGTCAATGATCTTGTTCAAGTTGCGAATGACAGTCTGGACGACTTC 100285 Query 106408 ATG-AAGTTTTTCATAATCAAAAGTGC-GAGTCTCTTCATTGACATACTTTGGAAGGGCG 106465 || || || || | ||||| | || | || | | | || | |||| | || Sbjct 100284 GTGCAACTTGTTGA-AATCATAGACGCCGCGT-TGAACGTCAACGAAGGTTGGCAAAGCC 100227 Query 106466 ATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTA 106525 || |||||||| ||||||||||| |||||| | | |||||| | || || || Sbjct 100226 ATGGATGCCAAGTTGCAAACAGCAACCTCATCAGGCGCAGAGTACTCAATGATCTCAGTG 100167 Query 106526 CACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCA 106585 |||| ||||| || ||| || ||||| ||||| || || ||||| |||||| ||| Sbjct 100166 CACAGATTGGAGCTGCGAATGGTTCCCAAGTTCTTCTGATTGCTCTTGCGGTTGCAAGCA 100107 Query 106586 TCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGA-GAATTGCCTTCCA 106644 || ||||| |||||| | || | || ||||| ||||| | ||||| |||| || | ||| Sbjct 100106 TCTTTGTAAAGCATGAAAGGGTTGCCAGTCTCGGTCTGGG-CTTGAAGAATGGCGTACCA 100048 Query 106645 -----------CAC--AT-------CGGC---GGC--------TGGTAC----------- 106662 ||| || |||| ||| | |||| Sbjct 100047 GAGCTTTTGGGCACGGATAGTTTCACGGCCACGGCCTTCTTTCTCGTACCTGGGAGCGGT 99988 Query 106663 ----AATGGCGTTGGCCCGTCCCTCC--GCCTCGTACTTTGTGTAGAGGGCTTCAAACTC 106716 | ||||| | | | | || || | ||||| |||||| ||||| ||||| Sbjct 99987 TAGTATTGGCGGTAGTCAAGCACTTGTGGCAACTTACTTCTCGTAGAGAGCTTCGAACTC 99928 Query 106717 CTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACC 106776 ||||| |||| ||||| || || || || || | |||| ||| | || Sbjct 99927 GTCACCGTAGATATCGGCAAGACCAGGGCACTCGTGAGGGCACATGAGAGTCCAGTCGCC 99868 Query 106777 ACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCT 106836 | || || || ||||||||||| ||||| |||||||||| || | || ||||| | Sbjct 99867 ATTCTGTTCGACGCGCTTCATGAACAGGTCGGGAATCCACAAGGCATAGAAAAGATCACG 99808 Query 106837 ACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGC 106896 | || || ||||| | || ||||| || | || | | | | || ||| || Sbjct 99807 AGCACGCGCTTCTTCTTTGCCGTGGTTCTTTCTCAGATCTAACCAGTTGAAGACATCGGC 99748 Query 106897 GTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTGATT 106950 |||||||||||| || |||| |||| | || ||||| ||| |||||| Sbjct 99747 GTGCCATGGCTCGAGGTAGATGGCGAATGCACCAG---GACGCTTGTTGCCACCTTGATC 99691 Query 106951 TACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACC 107010 || ||||| || || |||| ||| || || ||||| |||| || ||| | ||| || Sbjct 99690 AACGTAGCGAGCAGTCGCGTCAAAGACACGGAGCATAGGAACAAGACCGTTCGATGTGCC 99631 Query 107011 ATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACC 107070 ||||| || | ||| ||| | |||||| | ||| |||| | || ||||| Sbjct 99630 GTTTGTTCCTCCAATGTATGATCCAGTGGCTCGGATGCGATGTATGTTAAGGCCGATACC 99571 Query 107071 CCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGA 107130 ||||| |||||| || ||||| | | || || | |||||||| | ||| Sbjct 99570 ACCAGCGGTCTTTGAAATCATAGCACAAGTCTTGAGGGTGTCGTAGATACCCTCGATGCT 99511 Query 107131 GTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATT 107190 ||||||||| || | || ||||||||| || | |||||| ||||| || || || Sbjct 99510 GTCCTCCTTCGTGTCAATGAGGAAGCAAGACGAGAGTTGCGGTTGAGGTGTGCCTGCGTT 99451 Query 107191 GAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCA 107249 ||| || || || | ||||| |||| || | | ||||| | || |||||||| | Sbjct 99450 GAAAAGTGTAGGGGAGGCGTGCGTGAAG-TATTTGTTAGACATGTAGTTGTATGTCTGTA 99392 Query 107250 AGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGG 107309 | |||| |||||||| || ||||| ||||||| ||||||||||| | ||| | ||| | Sbjct 99391 TGGCAGATTCAATGTCCTCTCCGTGAATGCCGACTGCCACACGCATGATCATATGTTGTG 99332 Query 107310 G 107310 | Sbjct 99331 G 99331 >seq549 Length=285283 Score = 93.3 bits (102), Expect = 5e-14 Identities = 326/499 (65%), Gaps = 10/499 (2%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||| || ||||| ||||| || |||| ||||| ||||| Sbjct 206706 TAATCACCGACGCGCTTCTCGAAAAAGTTAGTCTTTCCGGCAAGAGATATGTTCTCCATG 206765 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTG-AGGAGACG 117104 ||||| || || || ||||| ||| || || | | | | | |||||| Sbjct 206766 AAGTCGAAGGGGTTGACGGCGTTGTAAACCT-TGACATTGCCAAGCGCAAGCAAGAGACG 206824 Query 117105 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACA 117164 ||| | ||| |||| ||||||| | |||| ||||||||| |||| | | || Sbjct 206825 ATCAGCAACAAACTCGATGTACTGGCACATGAGGGTAGAGTTCATGCCGAGCAATCTGCA 206884 Query 117165 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 117224 || | ||| || | ||| | | |||||| | || ||||| | | ||||||| | Sbjct 206885 CGGTAATGCTTCGCTCAAGAATTCCTGCTCAATTTGTACTGCCTCGGTGATGATGGCGCG 206944 Query 117225 GATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGA--AGAGCTCCACGGCAAACTCC 117282 || | ||| | | || | || | || ||| |||| |||||| || Sbjct 206945 GACGGCTTCAGGCGAAGGCTTCTT--GTTGAGCTGTGAGAAGAGGAGGCAGGCAAAGTCG 207002 Query 117283 TGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGA 117342 ||| | ||||| || || || |||||||| || |||||| | ||| ||||||||| Sbjct 207003 GTGTGCATTCCCTCGTCGCGAGAGATAAGTTCGTTGGAGAAGGTCAAGCCGGGCATGAGA 207062 Query 117343 CCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 117401 || |||||||| | ||| | |||| ||| || | ||| ||||||||||||||| || Sbjct 207063 CCGCGCTTCTTGAGCCAGAAGATAGATGCA-AAGGCGCCGCTGAAGAAGATACCCTCGAC 207121 Query 117402 ACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAA-CCATTTCA 117460 | || || || | || ||| || |||| ||| | | |||| ||| |||| Sbjct 207122 AGCTGCGAATGCGACGAGACGCGATGCAAAGG-TAGAGTTGTCATCGCAAATCCACTTCA 207180 Query 117461 TTGCCCATTTCGCCTTCTT 117479 |||||| | |||||||| Sbjct 207181 GTGCCCAGTCGGCCTTCTT 207199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589970379464120