Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148305.1_202016-10-31] 1,413 sequences; 60,939,407 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq859 150 4e-31 seq848 104 5e-17 seq519 89.7 1e-12 >seq859 Length=478526 Score = 150 bits (166), Expect = 4e-31 Identities = 148/189 (78%), Gaps = 4/189 (2%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| |||||||| || || || ||||| |||| || |||| ||||| ||| Sbjct 225519 ACAAGGTGAAGTGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCG 225460 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| | || || |||||||| || || || || ||||||||| Sbjct 225459 AGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGA 225400 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGT--CCGAACTTTCCACTTCAAGGGTAACCGTCT 195109 || || ||||||||| || ||||||| | | || || || |||||||| | ||||| Sbjct 225399 ATCTTGGTCTTGACGTTGTCGATGGTGTCGCTGGAC--TCAACCTCAAGGGTGATCGTCT 225342 Query 195110 TTCCTGTCA 195118 |||| |||| Sbjct 225341 TTCCGGTCA 225333 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || ||||| || || || ||||| ||| || || | |||||||| | |||||| || Sbjct 225963 GTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGTCCATCTTCCAACTGCTTTCCG 225904 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 |||||||| || || || |||||||||||||| ||||| ||||| || || || |||| Sbjct 225903 GCGAAGATGAGGCGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGATCTTCGTCTTG 225844 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 ||||| || |||||||| || ||| ||||| || |||| ||||| || || | || Sbjct 225843 ACGTTGTCGATGGTGTCAGAGGATTCAACTTCTAGTGTAATAGTCTTGCCGGTGAGGGTC 225784 Query 195124 TTTACGAACACTTGCAT 195140 || ||||| | |||||| Sbjct 225783 TTCACGAAGATTTGCAT 225767 Score = 131 bits (144), Expect = 4e-25 Identities = 157/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTT 194989 ||| | ||| |||||||| || || || || ||||| |||| |||| || | ||||||| Sbjct 225748 AACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAAG-GTGCGGCCATCTT 225690 Query 194990 CGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTT 195049 |||| ||||| || |||||||| | || || |||||||| || || || || ||||| | Sbjct 225689 CGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCCT 225630 Query 195050 GAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCT 195109 | || || |||||| || || |||||||| || || || || | ||| | |||| Sbjct 225629 GGATCTTGGTCTTGACATTGTCGATGGTGTCTGATGACTCAACCTCCAAGGTGATGGTCT 225570 Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || |||||||| || ||||| | |||||| Sbjct 225569 TGCCCGTCAAAGTCTTGACGAAGATTTGCAT 225539 >seq848 Length=225143 Score = 104 bits (114), Expect = 5e-17 Identities = 143/196 (73%), Gaps = 3/196 (2%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCT 194995 ||||| ||| | | | ||||| || ||||| ||| |||| || | ||||| || | | Sbjct 108658 GTGAAAAGTCG-CACCTTTTGGATGTTGTAGTCGCTCAAG-GTACGTCCATCCTCCAATT 108715 Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 |||| || || ||||| | ||| ||||||||||| ||||| || || |||||||| || | Sbjct 108716 GCTTTCCAGCAAAGATTAATCGCTGTTGGTCTGGCGGAATTCCCTCCTTGTCTTGGATCT 108775 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 | |||||| || || || ||||| || || || |||||||| | ||||| || | Sbjct 108776 TGGTCTTGACATTGTCGATAGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCG 108835 Query 195116 TCAAAGTTTTTACGAA 195131 | | ||||| ||||| Sbjct 108836 TGAGGGTTTTGACGAA 108851 >seq519 Length=105584 Score = 89.7 bits (98), Expect = 1e-12 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || ||||| || | || || | ||||||||| Sbjct 89135 ACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGATAGGGTGCGTCCATCTTCG 89194 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 |||||||| || |||||||| | || || |||||||| || || ||||| |||||| Sbjct 89195 AGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGGATTCCTTCCTTGTCT 89251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109461513875771