Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148305.1_202016-10-31] 1,413 sequences; 60,939,407 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq782 138 2e-27 seq549 123 5e-23 >seq782 Length=233898 Score = 138 bits (152), Expect = 2e-27 Identities = 475/733 (65%), Gaps = 12/733 (2%) Strand=Plus/Minus Query 221942 GTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGA 222001 ||| ||||| | | |||| |||||||| ||| | || || || ||| | || Sbjct 99945 GTAGAGAGCTT--CGAACTCGTCACCGTAGATATCGGCAAGACCAGGGCACTCGTGAGGG 99888 Query 222002 CACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCAC 222061 ||||| ||| |||||| || | || ||| | || |||||| ||||| || |||||| Sbjct 99887 CACATGAGAGTCCAGTCGCCATTCTGTTCGACGCGCTTCATGAACAGGTCGGGAATCCAC 99828 Query 222062 AGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCC 222121 | || | || ||||| | | ||| || || ||||| ||| || |||||||| Sbjct 99827 AAGGCATAGAAAAGATCACGAGCACGCGCTTCTTCTTTGCCGTGGTTCTTTCTCAGATCT 99768 Query 222122 AAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGC 222181 || | | || | || |||||||| ||||| || |||| ||| | || || || ||| Sbjct 99767 AACCAGTTGAAGACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAATGCACCAGGACGC 99708 Query 222182 TTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACC 222241 ||||||||||| ||||| || | | |||| |||| || || | || || Sbjct 99707 TTGTTGCCACCTTGATCAACGTAGCGAGCAGTCGCGTCAAAGACACGGAGCATAGGAACA 99648 Query 222242 AGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTG 222301 || ||||| ||| ||||| || || |||||| | || ||| | | | | || Sbjct 99647 AGACCGTTCGATGTGCCGTTTGTTCCTCCAATGTATGATCCAGTGGCTCGGATGCGA-TG 99589 Query 222302 GCAG-ACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTC 222360 | | |||||||||||| ||| || || ||||| || || ||||||| ||||| Sbjct 99588 TATGTTAAGGCCGATACCACCAGCGGTCTTTGAAATCATAGCACAAGTCTTGAGGGTGTC 99529 Query 222361 CATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGA 222420 ||| ||||| || ||||||||| || | || || |||||||| | || | Sbjct 99528 GTAGATACCCTCGATGCTGTCCTCCTTCGTGTCAATGAGGAAGCAAGACGAGAGTTGCGG 99469 Query 222421 TTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACAT 222480 || | | | ||||| || || || || |||||| || ||||| ||||||| Sbjct 99468 TTGAGGTGTGCCTGCGTTGAAAAGTGTAGGGGAGGCGTGCGTGAAGTATTTGTTAGACAT 99409 Query 222481 CAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAAT-CTGCATGGCGCATC 222539 | ||| |||| || | | | |||| || |||||||| | | || | || | Sbjct 99408 GTAGTTGTATGTCTGTATGGCAGATTCAATGTCCTCTCCGTGAATGCCGACTGCCACA-C 99350 Query 222540 TCATGTACATGTACTGGGGCCTCTCCACAGGACCCTTGGAGC---TGGAGAGCAGGTACG 222596 |||| ||| | || || | || ||| ||||| || | ||| ||||| | Sbjct 99349 GCATGATCATATGTTGTGGACGCT---CAGCGACCTTGCCGCTTATTCGGAGTAGGTATG 99293 Query 222597 ATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGG 222656 || |||||||||||||| |||||||| | | | || |||||| ||| || | || Sbjct 99292 ATCGCTCCAGAGTCTTGAAGCCAAAGTATTGGTAATTGAAATCTCTGTCGTATACAATGG 99233 Query 222657 CGGCGTCCAGCTC 222669 | | || || ||| Sbjct 99232 CAGAGTTCAACTC 99220 Score = 87.8 bits (96), Expect = 3e-12 Identities = 296/450 (66%), Gaps = 26/450 (6%) Strand=Plus/Minus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGA 221476 |||| ||| || ||||| |||||||| ||||| ||||||| |||| ||||||||| Sbjct 100505 GTCAAGGCGGCATGGTAAATGGTCTCGAAGATTTGAATGTTGAGCTTCTTTGCCTCGGGA 100446 Query 221477 GAAGTGAAGGGCATACG--CAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATAC 221534 || |||||||| || |||| ||||| | || || || |||||||| || | || Sbjct 100445 GACTCGAAGGGCAGGCGAAGAGCA-AGGAAAG-CATCAGCAAGACCCTGTACACCAACAC 100388 Query 221535 CGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGT 221594 ||| ||| | ||| | |||| | ||||| || |||||||| |||||||| Sbjct 100387 CGACGGGACGGTGACGGGAGTTGCTGTTGTATGCTTCGGGAACGGGATAGTGGTTGACGT 100328 Query 221595 CGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGAT 221654 | || | ||||| | ||| || ||| | || || ||| || ||| | Sbjct 100327 CAATGATCTTGTTCAAGTTGCGAATGACAGTCTGGACGACTTCGTGCAACTT------GT 100274 Query 221655 TGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGC--T 221712 |||| | || | | ||||| ||| || | || || || ||| ||||| || | Sbjct 100273 TGAA-ATCA--TAGACGCCG-CGTTGAACG--TCAACGAA--GGTT---GGCAAAGCCAT 100225 Query 221713 G---GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACA 221769 | |||| ||| || || || ||||| || | |||| |||||||| || || Sbjct 100224 GGATGCCAAGTTGCAAACAGCAACCTCATCAGGCGCAGAGTACTCAATGATCTCAGTGCA 100165 Query 221770 GAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTC 221829 || ||| || ||||| |||| || || ||||| |||||| ||| ||| || Sbjct 100164 CAGATTGGAGCTGCGAATGGTTCCCAAGTTCTTCTGATTGCTCTTGCGGTTGCAAGCATC 100105 Query 221830 CTTGTAGAGCATAAAGGGACCGCCAGTCTC 221859 ||||| ||||| || || ||||||||| Sbjct 100104 TTTGTAAAGCATGAAAGGGTTGCCAGTCTC 100075 >seq549 Length=285283 Score = 123 bits (136), Expect = 5e-23 Identities = 337/519 (65%), Gaps = 17/519 (3%) Strand=Plus/Minus Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACG 25869 ||| ||||| | |||||| ||||| |||||||||| | | | | |||| Sbjct 207211 CCCTGCATCCGCAAGAAGGCCGACTGGGCACTGAAGTGGATTTGCGATGACAACTCTACC 207152 Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929 |||| ||| || || || || || ||||| ||||| ||||| |||||||| | ||| Sbjct 207151 TTTGCATCGCGTCTCGTCGCATTCGCAGCTGTCGAGGGTATCTTCTTCAGCGGCGCCTTT 207092 Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAG 25989 || | ||||||||||||||| || || ||||||||| || ||| |||||||| Sbjct 207091 GCATCTATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCTTGACCTTCTCCAACGAA 207032 Query 25990 CTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCAC 26049 || ||| | |||||||| | |||| || ||||||||||| |||| | ||| Sbjct 207031 CTTATCTCTCGCGACGAGGGAATGCACACCGACTTTGCCTGCCTCCTCTTC-----TCAC 206977 Query 26050 TTGCTCCAC---AAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAG 26106 |||| || || ||||| | || ||||| | ||||||| ||||| || | Sbjct 206976 -AGCTCAACAAGAAGCCTTCGCCTGAAGCCGTCCGCGCCATCATCACCGAGGCAGTACAA 206918 Query 26107 ATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGA 26166 || ||| |||| || | ||||||||| | Sbjct 206917 ATTGAGCAGGAATTCTTGAGCGAAGCATTACCGTGCAGATTGCTCGGCATGAACTCTACC 206858 Query 26167 CTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTG--TGCCAGCTGGGACTCG 26224 |||||| |||| ||||| |||| ||| || || | ||| || ||| ||| || | Sbjct 206857 CTCATGTGCCAGTACATCGAGTTTGTTGCTGATCGTCTCTTGCTTGC--GCTTGGCAATG 206800 Query 26225 CCAGACTCTACAGTACGCC--TAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGG 26282 || | |||| ||||| ||||| |||||||| ||||| |||||||| | | || Sbjct 206799 TCAAGGTTTACA--ACGCCGTCAACCCCTTCGACTTCATGGAGAACATATCTCTTGCCGG 206742 Query 26283 GAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 ||||| ||||| || || ||| | ||||| || || || Sbjct 206741 AAAGACTAACTTTTTCGAGAAGCGCGTCGGTGATTACCA 206703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928828394278720