Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148305.1_202016-10-31] 1,413 sequences; 60,939,407 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq859 96.9 2e-14 seq848 87.8 1e-11 seq1359 86.0 4e-11 >seq859 Length=478526 Score = 96.9 bits (106), Expect = 2e-14 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| | |||||||| || || || || || || || || |||||||| |||||||| Sbjct 225922 ATCTTCCAACTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGAATACCTTCCTT 225863 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||| || ||||| ||||| || || || |||| | | | ||| || ||||| Sbjct 225862 GTCCTGGATCTTCGTCTTGACGTTGTCGATGGTGTCAGAGGATTCAACTTCTAGTGTAAT 225803 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || |||||||| ||||| ||||| ||||| Sbjct 225802 AGTCTTGCCGGTGAGGGTCTTCACGAAGATTTG 225770 >seq848 Length=225143 Score = 87.8 bits (96), Expect = 1e-11 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || | ||||||||||||||| || | || ||||| || || |||||||| ||||| Sbjct 108705 ATCCTCCAATTGCTTTCCAGCAAAGATTAATCGCTGTTGGTCTGGCGGAATTCCCTCCTT 108764 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 |||||| ||||| |||||| || ||||| |||| | |||||||| || Sbjct 108765 GTCTTGGATCTTGGTCTTGACATTGTCGATAGTGTCAGAGGACTCGACCTCAAGGGTGAT 108824 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAA 480764 || || || ||||| || || |||||| Sbjct 108825 GGTCTTGCCCGTGAGGGTTTTGACGAAA 108852 >seq1359 Length=164511 Score = 86.0 bits (94), Expect = 4e-11 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 474713 TATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCT 474772 || |||||| |||| || | | || || | || || || || || || || ||||| Sbjct 42626 TACCTTGGAAAAGATGTCAAGAACGCCGTCGTCACCGTCCCCGCCTACTTCAACGATTCC 42567 Query 474773 CAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATT 474832 || ||||||||||| || ||||| || || | ||||||||||| | || |||| Sbjct 42566 CAGCGTCAAGCAACAAAGGATGCCGGTGCCATCTCCGGTCTTAATGTCCTTCGGGTTATC 42507 Query 474833 AATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAG 474874 || || ||||| || || ||||| ||||| ||||| || ||| Sbjct 42506 AACGAGCCAACTGCTGCTGCACTCGCTTACGGTCTAGACAAG 42465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268118589574124