Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148305.1_202016-10-31] 1,413 sequences; 60,939,407 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq587 129 7e-24 seq782 116 5e-20 seq549 114 2e-19 seq2 105 8e-17 >seq587 Length=78999 Score = 129 bits (142), Expect = 7e-24 Identities = 95/111 (86%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||||||||||||||||| |||||| | || |||||| | || |||||| | || ||||| Sbjct 38637 GCCGCCAACTACCTCGATATCAAGGCCCTTCTCGATGTCGGCTGCAAGACCGTTGCCAAT 38696 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||||||||||||||||| || |||||||||||||| ||||| |||||| || Sbjct 38697 ATGATCAAGGGCAAGTCCCCAGAGGAGATCCGCAAAACCTTCAACATCCAG 38747 >seq782 Length=233898 Score = 116 bits (128), Expect = 5e-20 Identities = 180/257 (70%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 || || |||||||| || || ||| |||||| |||||||| || || || ||||| || Sbjct 99695 TGATCAACGTAGCGAGCAGTCGCGTCAAAGACACGGAGCATAGGAACAAGACCGTTCGAT 99636 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 |||||| || || | | ||| | || | ||| || | || | || |||| Sbjct 99635 GTGCCGTTTGTTCCTCCAATGTATGATCCAGTGGCTCGGATGCGATGTATGTTAAGGCCG 99576 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || || || || | ||| || || | || || ||||| ||||||||||| |||||| Sbjct 99575 ATACCACCAGCGGTCTTTGAAATCATAGCACAAGTCTTGAGGGTGTCGTAGATACCCTCG 99516 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 || ||| ||||| |||| | ||| ||||| |||||| |||||| || | ||||| Sbjct 99515 ATGCTGTCCTCCTTCGTGTCAATGAGGAAGCAAGACGAGAGTTGCGGTTGAGGTGTGCCT 99456 Query 1630306 GCGTTGAAGAGCGTGGG 1630322 |||||||| || || || Sbjct 99455 GCGTTGAAAAGTGTAGG 99439 >seq549 Length=285283 Score = 114 bits (126), Expect = 2e-19 Identities = 222/318 (70%), Gaps = 10/318 (3%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || |||||| |||||||||||| ||||| || | || || || Sbjct 206697 GCCTTCTGGTAATCACCGACGCGCTTCTCGAAAAAGTTAGTCTTTCCGGCAAGAGATATG 206756 Query 868751 AACTCCATCCACGGGAACGGGTTG--GGCGTCTTGTAGTGCTTTTCGCATCCGAGCG-AC 868807 |||||| | ||| |||||| ||||| |||| ||| | || |||| | Sbjct 206757 TTCTCCATGAAGTCGAAGGGGTTGACGGCGT--TGTAAACCTTGACATTGCCAAGCGCAA 206814 Query 868808 GCGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCG 868867 || || || || || || ||||||||||||||||||||||||||| | |||||||||| Sbjct 206815 GCAAG-AGACGATCAGCAACAAACTCGATGTACTGGCACATGAGGGTAGAGTTCATGCCG 206873 Query 868868 A-TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGAC 868926 | | | || ||| | | ||||||| || || | ||| || | || |||||| Sbjct 206874 AGCAATCTGCA-CGGTAATGCTTCGCTCAAGAATTCCTGCTCAATTTGTACTGCCTCGGT 206932 Query 868927 GATGATCTGCCTGGGC-ACGTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGC 868985 |||||| || || | | || | ||| ||||| ||| |||| | | |||| |||| Sbjct 206933 GATGAT-GGCGCGGACGGCTTCAGGCGAAGGCTTCTTGTTGAGCTGTGAGAAGAGGAGGC 206991 Query 868986 AGGCAAAGTCGCAGTGCA 869003 ||||||||||| ||||| Sbjct 206992 AGGCAAAGTCGGTGTGCA 207009 Score = 107 bits (118), Expect = 2e-17 Identities = 142/192 (74%), Gaps = 5/192 (3%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||||||| ||| | ||||||| |||| | |||||||||||| ||||||||| Sbjct 207012 CCCTCGTCGCGAGAGATAAGTTCGTTGGAGAAGGTCAAGCCGGGCATGAGACCGCGCTTC 207071 Query 869240 TTGAGCCAAAAGAT-GGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 |||||||| ||||| | ||| || ||| ||| ||||| |||||||| || || || Sbjct 207072 TTGAGCCAGAAGATAGATGCA-AAGGCGCCGCTGAAGAAGATACCCTCGACAGCTGCGAA 207130 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 ||| ||| ||| |||||| || || | || | | |||||||||| ||||| Sbjct 207131 TGCGACGAGACGCGATGCAAAG--GTAGA-GTTGTCATCGCAAATCCACTTCAGTGCCCA 207187 Query 869359 GTCGGCCTTTTT 869370 ||||||||| || Sbjct 207188 GTCGGCCTTCTT 207199 >seq2 Length=370035 Score = 105 bits (116), Expect = 8e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 |||||||| || ||||| || || ||||| || || || |||| ||| || || ||| Sbjct 144347 GACAGCATTGGTGGCACAGTCACCTGCGTTCTGCGTAATGTACCGGTAGGACTGGGAGAG 144406 Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 || ||||||||||| | |||||| ||| || ||||||||||| ||||| ||| | || Sbjct 144407 CCTTGCTTTGACAAATTGGAGGCCAAGCTTGCACACGCCATGCTCTCGATACCGTCGACG 144466 Query 19167 AAGGGATTCGAGATTGGCAGCGGGTT 19192 || |||||||| || ||| ||||| Sbjct 144467 AAAGGATTCGAAATCGGCTCTGGGTT 144492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107023242602921