Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148305.1_202016-10-31] 1,413 sequences; 60,939,407 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq587 129 9e-24 seq782 96.9 5e-14 seq549 91.5 2e-12 seq970 86.0 1e-10 >seq587 Length=78999 Score = 129 bits (142), Expect = 9e-24 Identities = 95/111 (86%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||||||||||||||||| |||||| |||| |||||| | || ||||||||||| ||||| Sbjct 38637 GCCGCCAACTACCTCGATATCAAGGCCCTTCTCGATGTCGGCTGCAAGACCGTTGCCAAT 38696 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAG 2035757 | |||||||||||||| || ||||| |||||||| ||||| |||||| || Sbjct 38697 ATGATCAAGGGCAAGTCCCCAGAGGAGATCCGCAAAACCTTCAACATCCAG 38747 >seq782 Length=233898 Score = 96.9 bits (106), Expect = 5e-14 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 2071819 GGGCAAAAGAGCGACCAGTCGCCGC-CAGTCACCACGCGGCGCATAAACAGGTCGCACGT 2071877 ||||| | ||| | ||||||||| | || | ||||| ||| ||||||||| | Sbjct 99890 GGGCACATGAGAGTCCAGTCGCCATTCTGTT-CGACGCGCTTCATGAACAGGTCGGGAAT 99832 Query 2071878 CCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAG 2071937 ||||| | | || || ||||| || || || || || ||||||||||||||| |||| Sbjct 99831 CCACAAGGCATAGAAAAGATCACGAGCACGCGCTTCTTCTTTGCCGTGGTTCTTTCTCAG 99772 Query 2071938 GTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTT 2071997 || | ||||| || || ||||||||||| ||||| |||||| ||| || || || Sbjct 99771 ATCTAACCAGTTGAAGACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAATGCACCAGG 99712 Query 2071998 GCGCTTGCCGCCGCC 2072012 |||||| ||| || Sbjct 99711 ACGCTTGTTGCCACC 99697 >seq549 Length=285283 Score = 91.5 bits (100), Expect = 2e-12 Identities = 205/300 (68%), Gaps = 6/300 (2%) Strand=Plus/Plus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 || || || |||||| |||||||||||| ||||| || | || || || |||||| Sbjct 206706 TAATCACCGACGCGCTTCTCGAAAAAGTTAGTCTTTCCGGCAAGAGATATGTTCTCCATG 206765 Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCG-ACGCAAGCAGGCG 794026 | ||| |||||| | | ||| ||| | || |||| | ||||| || || Sbjct 206766 AAGTCGAAGGGGTTGACGGCGTTGTAAACCTTGACATTGCCAAGCGCAAGCAAG-AGACG 206824 Query 794027 GTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGA-TGAGCGCCA 794085 || || || || || ||||||||||||||||||| | ||||||||||| | | || Sbjct 206825 ATCAGCAACAAACTCGATGTACTGGCACATGAGGGTAGAGTTCATGCCGAGCAATCTGCA 206884 Query 794086 CGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCTGCC 794145 | || | | ||||| | || || | ||| || | || |||||| ||||||| || Sbjct 206885 C-GGTAATGCTTCGCTCAAGAATTCCTGCTCAATTTGTACTGCCTCGGTGATGAT-GGCG 206942 Query 794146 TGGGC-ACGTCGGACGACGGCTTGTCGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTCG 794204 || | | || | ||| ||||| | | |||| | | |||| ||||||||||||||| Sbjct 206943 CGGACGGCTTCAGGCGAAGGCTTCTTGTTGAGCTGTGAGAAGAGGAGGCAGGCAAAGTCG 207002 Score = 89.7 bits (98), Expect = 8e-12 Identities = 136/192 (71%), Gaps = 5/192 (3%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||||||| ||| | ||||||| ||| | |||||||||||| ||||||||| Sbjct 207012 CCCTCGTCGCGAGAGATAAGTTCGTTGGAGAAGGTCAAGCCGGGCATGAGACCGCGCTTC 207071 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| ||||| | || ||| ||| ||||| |||||||| || || || Sbjct 207072 TTGAGCCAGAAGATAGATGCAAAGGCGCCGCTGAAGAAGATACCCTCGACAGCTGCGAAT 207131 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAG-GCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 ||||||| ||| ||||| || || | || | | |||||||||| ||||| Sbjct 207132 GCGACGAGACGCGATGCAAAGGT----AGAGTTGTCATCGCAAATCCACTTCAGTGCCCA 207187 Query 794520 CTCTGCCTTTTT 794531 || ||||| || Sbjct 207188 GTCGGCCTTCTT 207199 >seq970 Length=468298 Score = 86.0 bits (94), Expect = 1e-10 Identities = 140/196 (71%), Gaps = 7/196 (4%) Strand=Plus/Minus Query 2411401 GCCTCGCTGGCGCTCATCTTGCCGTCCTTGGTGAGGCCCGGCACCAGCGGGTTGAGCAGG 2411460 || |||||||||||||| |||||| ||||| || || || |||| ||||| | ||| Sbjct 97128 GCGTCGCTGGCGCTCATTTTGCCG-CCTTG--TAGACCGGGGACCATGGGGTTCATCAGA 97072 Query 2411461 TGGATGCGC-TTG-CGGTAGCCCAGCGCCGGCAGGTGGTCGCGCGCAAAGGCAAAGATCT 2411518 || ||||| ||| |||||||| | | || ||| || || | || || || | Sbjct 97071 TG--TGCGCGTTGTCGGTAGCCGATCTTGGGGAGGGATTCTTTTGCGAGGGTGAATATTT 97014 Query 2411519 TGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCCT 2411578 |||| |||||| ||||| || |||||||| ||||| ||||| | ||| || || | Sbjct 97013 TGCGTTGGTCGACGCCGCCGAATTGGGCGTCTACGTCTAGGTGTTCCTCATCTAGACATT 96954 Query 2411579 GCATGAGCGGGTAGAC 2411594 |||| | |||||||| Sbjct 96953 GCATAATTGGGTAGAC 96938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916096092745307