Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148305.1_202016-10-31] 1,413 sequences; 60,939,407 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq549 132 5e-26 seq782 118 1e-21 seq859 107 2e-18 >seq549 Length=285283 Score = 132 bits (146), Expect = 5e-26 Identities = 345/520 (66%), Gaps = 17/520 (3%) Strand=Plus/Plus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || ||| || |||||||| ||||| |||||||| || || || | | || ||||| | Sbjct 206702 CTGGTAATCACCGACGCGCTTCTCGAAAAAGTTAGTCTTTCCGGCAAGAGATATGTTCTC 206761 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470 ||| || ||||| |||||| ||||| | || | ||| | | | | || Sbjct 206762 CATGAAGTCGAAGGGGTTGACGGCGTTGTAAACCTTGACATTGCCAAGCGCAAGCAAGAG 206821 Query 120471 TCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAA-CG 120529 || || || |||||||| ||||||| ||||||| | ||||||||| ||||| | Sbjct 206822 ACGATCAGCAACAAACTCGATGTACTGGCACATGAGGGTAGAGTTCATGCCGAGCAATCT 206881 Query 120530 CCACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGG 120589 ||| || || || | || || |||| |||||| | || ||||| ||| |||| Sbjct 206882 GCAC-GGTAATGCTTCGCTCAAGAATTCCTGCTCAATTTGTACTGCCTCGGTGATGATGG 206940 Query 120590 CGAGCATAGTGTG-GCCG--GGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACG 120646 || | | | | | || ||| |||||| || || | | || ||||| | Sbjct 206941 CGCGGACGGCTTCAGGCGAAGGCTTCTTGT------TGAGCTGTGAGAAGAGGAGGCAGG 206994 Query 120647 CAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGG 120706 ||||||| ||||||| ||||||||||| || || || |||||| || |||| ||||| Sbjct 206995 CAAAGTCGGTGTGCATTCCCTCGTCGCGAGAGATAAGTTCGTTGGAGAAGGTCAAGCCGG 207054 Query 120707 GCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGC 120766 |||||| || | |||||| |||| || | |||||| ||| ||||| | | Sbjct 207055 GCATGAGACCGCGCTTCTTGAGCCAGAAGATAGATGCAAAGGCGCCGCTGAAGAAGATAC 207114 Query 120767 CCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCG---A 120823 |||| || || || ||||| | ||| || || || | ||| ||| | Sbjct 207115 CCTCGACAGCTGCGAATGCGACGAGACGCGATGCAAAGGT---AGAGTTGTCATCGCAAA 207171 Query 120824 TCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGG 120863 ||||||||| ||||| |||||||| ||||| | ||| || Sbjct 207172 TCCACTTCAGTGCCCAGTCGGCCTTCTTGCGGATGCAGGG 207211 >seq782 Length=233898 Score = 118 bits (130), Expect = 1e-21 Identities = 598/936 (64%), Gaps = 38/936 (4%) Strand=Plus/Minus Query 148062 TGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGA--GT-CGCTTTATCTTCATC 148118 || |||||||| |||||||| || || ||||| || | || |||| | || Sbjct 100994 TGATCAATGAAGGCGCCACGATCCGCAGCCATGGTGATAATGGTACGCTGGCTG---ATT 100938 Query 148119 TCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACC 148178 ||||| |||||||||| || |||||||| ||||||||| ||| ||| | Sbjct 100937 TCCCAAACCGTCTTGTAAAGGGCCTTGATATCATCGGGAATATTAGGAATGTTCTGGATA 100878 Query 148179 GAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATC 148238 || || | | |||| || |||| ||| | ||||| | || | ||||| Sbjct 100877 GAACCACCCTCTGCAATGATACGATTCTTCATGTTGTCCGACCAAAGACCCATCTCGACG 100818 Query 148239 AGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGA 148298 || || | || ||| | | || || || || || || || || ||||| || || ||| Sbjct 100817 AGATCTTTGAGCAGCCATGGGTTGACGACTTGGAATTCCCCAGCAAGCACACGACG-AGA 100759 Query 148299 -TACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGT 148357 || | || ||| | || || || |||||||| || | ||| || | || | Sbjct 100758 GTAGATATTTGACGTGTATGGCTCGAAGCACTCGTTGAAACCGAGAATTTGAGATGTGGA 100699 Query 148358 TGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCG 148417 || || ||||| || || || || |||||||| | |||| | || || || | Sbjct 100698 AGCAGTTGGCATAGGAGCAACAAGAAGTGAGTTGCGAATACCGTGCTTCTTGATATCAGC 100639 Query 148418 CTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAG 148477 ||| || | ||||||||||||| || || || |||||||||||||||||||| || Sbjct 100638 CTTGAGCGAGTCCCAGTCCCAGAGATCCGTAGGAGTGACGTTCCACATGTCGTACTGGAG 100579 Query 148478 AATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAG 148537 ||| || || | | || ||||||||| | |||| | || | | || || Sbjct 100578 AATACCCTGGGAAACTGGAGAGCCCTCGTAGGTTTTGTATGTGCCTTCTTCTTGTGCAAG 100519 Query 148538 TTCGCAGCTCGCC-TCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCA 148596 | |||| | || || ||| | | |||||| |||||| ||||| |||||||| Sbjct 100518 CTTGCAGGAAGAGGTCAAG-GCGGCATGGTAAATGGTCTCGAAGATTTGAATGTTGAGCT 100460 Query 148597 GCGCCGCCGACTCGCTT---TCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGC 148653 | ||| ||| ||| | |||| || || | || || || ||||| | Sbjct 100459 TCTTTGCC---TCGGGAGACTCGAAGGGCAGGCGAAGAGCAAGGAAAGCATCAGCAAGAC 100403 Query 148654 CCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCG 148713 ||||||| || || || | ||| ||||| |||| | | || || || || Sbjct 100402 CCTGTACACCAACACCGACGGGACGGTGACGGGAGTTGCTGTTGTATGCT-TCGGGAACG 100344 Query 148714 G-ATAGTGGTTGCGGTCGATGATCTTGT-CAAGATTGCGCACCACCACCTTTGTAATTCT 148771 | |||||||||| ||| |||||||||| |||| ||||| | || || | | Sbjct 100343 GGATAGTGGTTGACGTCAATGATCTTGTTCAAG-TTGCGAATGACAGTCTGGACGACTTC 100285 Query 148772 GCGCAGCAATTCAAAATCGTAC--------TTGT-CATCTACGATGCATCGGTTCACGGC 148822 | ||| | | ||||| || ||| | || |||| | | | || || Sbjct 100284 GTGCAACTTGTTGAAATCATAGACGCCGCGTTGAACGTCAACGAAGGTTGG---CAAAGC 100228 Query 148823 GATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGC 148882 || || || | ||||| || || |||||| || || |||||| | |||||| | Sbjct 100227 CATGGATGCCAAGTTGCAAACAGCAACCTCATCAGGCGCAGAGTACTCAATGATCTCAGT 100168 Query 148883 GCACAGATTG---CTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCA 148939 |||||||||| |||| || | |||| |||||| ||||||||||||| |||||| Sbjct 100167 GCACAGATTGGAGCTGCGAATGGTT---CCCAAGTTCTTCTGATTGCTCTTGCGGTTGCA 100111 Query 148940 CGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTC 148975 || || ||||| |||||| | || |||||| || Sbjct 100110 AGCATCTTTGTAAAGCATGAAAGGGTTGCCAGTCTC 100075 >seq859 Length=478526 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| || ||||| || ||||| ||| || ||| | | | || ||||| |||||||| Sbjct 225735 GTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCA-TCTTCGAGTTGCTTGCC 225677 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | ||||||||||| || ||||| || |||||||| |||||| ||| Sbjct 225676 GGCGAAGATCAAGCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGGATCTTGGTCTT 225617 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||| | | ||| || || | ||||| ||| ||||| |||| ||| Sbjct 225616 GACATTGTCGATGGTGTCTGATGACTCAACCTCCAAGGTGATGGTCTTGCCCGTCAAAGT 225557 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| || ||||| Sbjct 225556 CTTGACGAAGATTTGCAT 225539 Score = 105 bits (116), Expect = 6e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| ||||| || ||||| |||| || ||| | | | || || | Sbjct 225972 AAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGTCCA-TCTTCCAA 225914 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| | ||||| ||||||||||| ||||| || ||||||||||| ||| Sbjct 225913 CTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGAT 225854 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | || | ||||| | || || || || | || | || ||||| Sbjct 225853 CTTCGTCTTGACGTTGTCGATGGTGTCAGAGGATTCAACTTCTAGTGTAATAGTCTTGCC 225794 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || || ||||| || ||||| Sbjct 225793 GGTGAGGGTCTTCACGAAGATTTGCAT 225767 Score = 95.1 bits (104), Expect = 1e-14 Identities = 128/176 (73%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| ||| | || | | | ||||||||||||||||| Sbjct 225507 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCA-TCCTCGAGCTGCTTGCC 225449 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | ||||||||||| || ||||| || |||||||| ||||| ||| Sbjct 225448 GGCGAAGATCAAGCGCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGAATCTTGGTCTT 225389 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCA 133638 || | || | |||||| ||| ||| || || | ||||| || || ||||||| Sbjct 225388 GACGTTGTCGATGGTGTCGCTGGACTCAACCTCAAGGGTGATCGTCTTTCCGGTCA 225333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483412261580120