Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148305.1_202016-10-31] 1,413 sequences; 60,939,407 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq782 185 1e-41 seq549 96.9 4e-15 seq649 93.3 5e-14 >seq782 Length=233898 Score = 185 bits (204), Expect = 1e-41 Identities = 419/627 (67%), Gaps = 11/627 (2%) Strand=Plus/Minus Query 111464 TACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTG 111523 ||||| |||||| ||||| ||||| ||||| |||| ||||| || || | Sbjct 99953 TACTTCTCGTAGAGAGCTTCGAACTCGTCACCGTAGATATCGGCAAGACCAGGGCACTCG 99894 Query 111524 TCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGA 111583 | || || | |||| ||| | ||| | || || ||||||||||| ||||| ||| Sbjct 99893 TGAGGGCACATGAGAGTCCAGTCGCCATTCTGTTCGACGCGCTTCATGAACAGGTCGGGA 99834 Query 111584 ATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT 111643 ||||||| || | || ||||| | | || || ||||| | || ||||| || Sbjct 99833 ATCCACAAGGCATAGAAAAGATCACGAGCACGCGCTTCTTCTTTGCCGTGGTTCTTTCTC 99774 Query 111644 AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCC 111703 | || | | | | || ||| |||||||||||||| || |||| |||| || | Sbjct 99773 AGATCTAACCAGTTGAAGACATCGGCGTGCCATGGCTCGAGGTAGATGGCGA---ATGCA 99717 Query 111704 TTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGC 111757 ||||| ||| |||||| || ||||| || || |||| ||| || || ||| Sbjct 99716 CCAGGACGCTTGTTGCCACCTTGATCAACGTAGCGAGCAGTCGCGTCAAAGACACGGAGC 99657 Query 111758 ATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTC 111817 || |||| || ||| | ||| || ||||| || | ||| ||| | |||||| Sbjct 99656 ATAGGAACAAGACCGTTCGATGTGCCGTTTGTTCCTCCAATGTATGATCCAGTGGCTCGG 99597 Query 111818 ACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTA 111877 | ||| |||| | || ||||| ||||| |||||| || ||||| | | Sbjct 99596 ATGCGATGTATGTTAAGGCCGATACCACCAGCGGTCTTTGAAATCATAGCACAAGTCTTG 99537 Query 111878 AGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGAC 111937 || || | |||||||| | ||| ||||||||| || | || ||||||||| || Sbjct 99536 AGGGTGTCGTAGATACCCTCGATGCTGTCCTCCTTCGTGTCAATGAGGAAGCAAGACGAG 99477 Query 111938 ATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT 111997 | |||||| ||||| || || ||||| || || || | ||||| |||| || | Sbjct 99476 AGTTGCGGTTGAGGTGTGCCTGCGTTGAAAAGTGTAGGGGAGGCGTGCGTGAA-GTATTT 99418 Query 111998 -TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGAT 112056 | ||||| | || |||||||| | | |||| |||||||| || ||||| ||||||| Sbjct 99417 GTTAGACATGTAGTTGTATGTCTGTATGGCAGATTCAATGTCCTCTCCGTGAATGCCGAC 99358 Query 112057 TGCGACCCGCATGAACATGTACTGTGG 112083 ||| || ||||||| ||| | ||||| Sbjct 99357 TGCCACACGCATGATCATATGTTGTGG 99331 Score = 123 bits (136), Expect = 3e-23 Identities = 683/1076 (63%), Gaps = 24/1076 (2%) Strand=Plus/Minus Query 110354 GCCTTTGATCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGC 110413 ||| | | |||||| |||||||| || |||||||| || ||||| | | ||| Sbjct 101111 GCCATGGTTCGGAGGTAGTACATTCCAGTCTTGAGACCCATCTTCCAACCAGCAAAGTGC 101052 Query 110414 ATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGG 110473 || |||| | |||| ||| || || || |||| | ||||| || ||| ||| Sbjct 101051 ATGGAAGTAATCTTGCCCATGGTCGGCTCTTTCATGTGAATGTTCAAGCTCTGAGATTGA 100992 Query 110474 TCAATGAAGCGCCCCCGTTGTGCCGCCAT----ATCAATGACATCCTTCATCTTAATTTC 110529 ||||||||| || || | || ||||| || |||| | || | ||||| Sbjct 100991 TCAATGAAGGCGCCACGATCCGCAGCCATGGTGAT-AATGGTACGCTGGCTG---ATTTC 100936 Query 110530 CCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGA 110589 |||||| || || || |||||||||||| || |||| | || |||||||| || Sbjct 100935 CCAAACCGTCTTGTAAAGGGCCTTGATATCATCGGGAATATTAGGAATGTTCTGGATAGA 100876 Query 110590 ACCCCCCGCCTTCACCATGA---GATCCTTCATATCCTTGGACCAGAGACCAATCTTCTT 110646 ||| ||| | | || |||| ||| |||||| | | ||||| ||||| |||| Sbjct 100875 ACCACCCTC-TGCA--ATGATACGATTCTTCATGTTGTCCGACCAAAGACCCATCTCGAC 100819 Query 110647 GAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAG 110706 ||| || |||| || |||||| | || || || || || | | Sbjct 100818 GAGATCTTTGAGCAGCCATGGGTTGACGACTTGGAATTCCCCAGCAAGCACACGACGAGA 100759 Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 |||||| |||| |||||||| || ||||| || || ||| | ||||| | ||||| Sbjct 100758 GTAGATATTTGACGTGTATGGCTCGAAGCACTCGTTGAAACCGAGAATTTGAGATGTGGA 100699 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 || |||||||| || || | | ||| ||| |||| ||| | || |||||| | Sbjct 100698 AGCAGTTGGCATAGGAGCAACAAGAAGTGAGTTGCGAATACCGTGCTTCTTGATATCAGC 100639 Query 110827 CTTGAGAACATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATGTCAAACTGA 110884 |||||| |||||||| || || | | || | || |||| ||||||| |||| Sbjct 100638 CTTGAGCGAGTCCCAGTCCCAGA-GATCCGTAGGAGTGACGTTCC-ACATGTCGTACTGG 100581 Query 110885 AGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCC 110944 || | || ||||| | ||||| ||||| |||||| || | |||| ||| || Sbjct 100580 AGAATACCCTGGGAAACTGGAGAGCCCTCGTAGGTTTTGTATGTGCCTTCTTCTTGTGCA 100521 Query 110945 AATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 111004 | | ||| | || || || || || ||||| || ||||| || || | | Sbjct 100520 AGCTTGCAGGAAGAGGTCAAGGCGGCATGGTAAATGGTCTCGAAGATTTGAATGTTGAGC 100461 Query 111005 TCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAA-AATAAATACATCCGCGAGACC 111063 | ||| || || || || || | | || | | | || || |||| || ||||| Sbjct 100460 TTCTTTGCCTCGGGAGACTCGAAGG-GCAGGCGAAGAGCAAGGAAAGCATCAGCAAGACC 100402 Query 111064 TTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGG 111123 || ||||| | ||| | || | ||| || || || || |||||| Sbjct 100401 CTGTACACCAACACCGACGGGACGGTGACGGGAGTTGCTGTTGTATGCTTCGGGAACGGG 100342 Query 111124 ATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATG 111183 ||| || |||||||| ||| | || | ||| ||| || ||| || Sbjct 100341 ATAGTGGTTGACGTCAATGATCTTGTTCAAGTTGCGAATGACAGTCTGGACGACTTCGTG 100282 Query 111184 -AAGTTTTTCATAATCAAAAGTGC-GAGTCTCTTCATTGACATACTTTGGAAGGGCGATT 111241 || || || | ||||| | || | || | | | || | |||| | || || Sbjct 100281 CAACTTGTTGA-AATCATAGACGCCGCGT-TGAACGTCAACGAAGGTTGGCAAAGCCATG 100224 Query 111242 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAT 111301 |||||||| ||||||||||| |||||| | | |||||| | || || || || Sbjct 100223 GATGCCAAGTTGCAAACAGCAACCTCATCAGGCGCAGAGTACTCAATGATCTCAGTGCAC 100164 Query 111302 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCC 111361 | ||||| || ||| || ||||| ||||| || || ||||| |||||| ||||| Sbjct 100163 AGATTGGAGCTGCGAATGGTTCCCAAGTTCTTCTGATTGCTCTTGCGGTTGCAAGCATCT 100104 Query 111362 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417 ||||| |||||| | || | || ||||| ||||| | || ||||| || | ||| Sbjct 100103 TTGTAAAGCATGAAAGGGTTGCCAGTCTCGGTCTGGGCTTGAAGAATGGCGTACCA 100048 >seq549 Length=285283 Score = 96.9 bits (106), Expect = 4e-15 Identities = 327/501 (65%), Gaps = 14/501 (3%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || ||||| |||||||| || ||||| ||||| || |||| ||||| ||||| Sbjct 206706 TAATCACCGACGCGCTTCTCGAAAAAGTTAGTCTTTCCGGCAAGAGATATGTTCTCCATG 206765 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTG-AGGAGACG 122489 ||||| || || || ||||| ||| || || | | | | | |||||| Sbjct 206766 AAGTCGAAGGGGTTGACGGCGTTGTAAACCT-TGACATTGCCAAGCGCAAGCAAGAGACG 206824 Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 122549 ||| | ||| |||| ||||||| | |||| ||||||||| |||| | | || Sbjct 206825 ATCAGCAACAAACTCGATGTACTGGCACATGAGGGTAGAGTTCATGCCGAGCAATCTGCA 206884 Query 122550 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 122609 || | ||| || | ||| | | |||||| | || ||||| | | ||||||| | Sbjct 206885 CGGTAATGCTTCGCTCAAGAATTCCTGCTCAATTTGTACTGCCTCGGTGATGATGGCGCG 206944 Query 122610 GATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGA--AGAGCTCCACGGCAAACTCC 122667 || | ||| | | || | || | || ||| |||| |||||| || Sbjct 206945 GACGGCTTCAGGCGAAGGCTTCTT--GTTGAGCTGTGAGAAGAGGAGGCAGGCAAAGTCG 207002 Query 122668 TGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGA 122727 ||| | ||||| || || || |||||||| || |||||| | || ||||||||| Sbjct 207003 GTGTGCATTCCCTCGTCGCGAGAGATAAGTTCGTTGGAGAAGGTCAAGCCGGGCATGAGA 207062 Query 122728 CCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 122786 || |||||||| | ||| | |||| ||| || | ||| ||||||||||||||| || Sbjct 207063 CCGCGCTTCTTGAGCCAGAAGATAGATGCA-AAGGCGCCGCTGAAGAAGATACCCTCGAC 207121 Query 122787 ACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATC---AAACCATTT 122843 | || || || | || || || |||| ||| || |||| || ||| || Sbjct 207122 AGCTGCGAATGCGACGAGACGCGATGCAAAGG---TAGAGTTGTCATCGCAAATCCACTT 207178 Query 122844 CATTGCCCATTTCGCCTTCTT 122864 || |||||| | |||||||| Sbjct 207179 CAGTGCCCAGTCGGCCTTCTT 207199 >seq649 Length=258932 Score = 93.3 bits (102), Expect = 5e-14 Identities = 223/332 (67%), Gaps = 8/332 (2%) Strand=Plus/Minus Query 182520 CCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACCATAGCGA 182579 |||||||| || |||||||| | ||| ||| ||||| ||||| | | ||||||| || Sbjct 184751 CCCTTGATATGGGAACCATCGTGATCCTGATCCGTCATGATCATCAAATGACCATATCGC 184692 Query 182580 AGTTCAGAAACATCTTGGTAGTCTTTTCCTTGT--TGAAGACCAAGGATCTTCTTGAGAT 182637 | | | || ||| || || ||||| || || || | || |||||||| | Sbjct 184691 AATCCTTTCGTGTCAGTGTACTCCTT--CTTGTGCTGCAGGCCCATGAACTTCTTGATGT 184634 Query 182638 CATTGAACTCCTGGTTTGATGTAAGCTGTGCCACCGAAGCGTCCCGAACATTCTTACATT 182697 | || ||| ||| | || || ||||| | |||||| || || || ||| Sbjct 184633 TCTGGATCTCAGCGTTGTTGGAAATTTGGGCCACGGTAGCGTCTCGCACGTTGAGCAATT 184574 Query 182698 TACCGCGAAGTGGGAACACACCGTAGTGATCACGACCAACGACAGAGAGACCCGCAACCG 182757 |||| ||||| ||||| |||||| |||| || || || | | || |||| | Sbjct 184573 TACCACGAAGCGGGAAAACACCGATCAAATCAGGATTGACCACCGCACGCCCAGCAAGAG 184514 Query 182758 CGAGGGTTTTCGCCGAATCACCCTCCGTGACAATGAGAGTACACTTTCCAGATTGTGC-- 182815 | || | || || |||||||| |||| |||||||||||| ||||||| || | Sbjct 184513 CAAGACCACTGGCAGAGTCACCCTCAGTGAGAATGAGAGTACA-TTTCCAG-CCGTCCTT 184456 Query 182816 CGTACCCGCCTTGTTCGCGTCATCCAACTTGG 182847 |||||||||||||| || || |||||||| Sbjct 184455 AGTACCCGCCTTGTTGGCATCCGTCAACTTGG 184424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628020907384800