Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148305.1_202016-10-31] 1,413 sequences; 60,939,407 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq782 136 5e-27 seq549 107 2e-18 seq413 87.8 2e-12 >seq782 Length=233898 Score = 136 bits (150), Expect = 5e-27 Identities = 408/627 (65%), Gaps = 11/627 (2%) Strand=Plus/Minus Query 118938 TACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTA 118997 ||||| |||||| ||||| ||||| ||||| | || | || || || || Sbjct 99953 TACTTCTCGTAGAGAGCTTCGAACTCGTCACCGTAGATATCGGCAAGACCAGGGCACTCG 99894 Query 118998 TCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGG 119057 | ||||| | ||||| ||| | ||| || || || ||||||||||| ||||| || Sbjct 99893 TGAGGGCACATGAGAGTCCAGTCGCCATTCTGTTCGACGCGCTTCATGAACAGGTCGGGA 99834 Query 119058 ATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGC 119117 ||||| | || |||| ||||| ||| || |||||||| | || || || | | Sbjct 99833 ATCCACAAGGCATAGAAAAGATCACGAGCACGCGCTTCTTCTTTGCCGTGGTTCTTTCTC 99774 Query 119118 AACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCC 119177 | || || ||| | || ||| |||||||| || || ||||| | |||| || || Sbjct 99773 AGATCTAACCAGTTGAAGACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAATGCACC- 99715 Query 119178 TTACGACGA------CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGC 119231 | |||| ||| | || | || || | ||||| |||| ||| ||||| ||| Sbjct 99714 --AGGACGCTTGTTGCCACCTTGATCAACGTAGCGAGCAGTCGCGTCAAAGACACGGAGC 99657 Query 119232 ATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTG 119291 || |||| | ||| | ||| ||| ||||| || | ||| || | |||||| | Sbjct 99656 ATAGGAACAAGACCGTTCGATGTGCCGTTTGTTCCTCCAATGTATGATCCAGTGGCTCGG 99597 Query 119292 ACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTG 119351 | || |||| | || ||||| || || |||||| || || || | || Sbjct 99596 ATGCGATGTATGTTAAGGCCGATACCACCAGCGGTCTTTGAAATCATAGCACAAGTCTTG 99537 Query 119352 AGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGAC 119411 || || ||||||| || ||||| ||| |||| | | ||||||||||| ||| Sbjct 99536 AGGGTGTCGTAGATACCCTCGATGCTGTCCTCCTTCGTGTCAATGAGGAAGCAAGACGAG 99477 Query 119412 ATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT 119471 | ||| || ||||| || |||||||| || || || | ||||| |||| || | Sbjct 99476 AGTTGCGGTTGAGGTGTGCCTGCGTTGAAAAGTGTAGGGGAGGCGTGCGTGAA-GTATTT 99418 Query 119472 -TGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGAT 119530 | ||||| | || ||| |||| | | | | |||||| || |||||||| |||| Sbjct 99417 GTTAGACATGTAGTTGTATGTCTGTATGGCAGATTCAATGTCCTCTCCGTGAATGCCGAC 99358 Query 119531 CGAGACCCGCATAAACATGTATTgggg 119557 | || ||||| | ||| | ||| || Sbjct 99357 TGCCACACGCATGATCATATGTTGTGG 99331 Score = 93.3 bits (102), Expect = 5e-14 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 118750 CAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTT 118809 ||| |||||| || || || ||||||| || || || |||||| ||||||||||| | Sbjct 100189 CAGAGTACTCAATGATCTCAGTGCACAGATTGGAGCTGCGAATGGTTCCCAAGTTCTTCT 100130 Query 118810 GATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTT 118869 |||| ||| ||| || ||||| |||||||||||| | || | || ||||| || | Sbjct 100129 GATTGCTCTTGCGGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTGCCAGTCTCGGTCT 100070 Query 118870 GGGACTTG-AGAATAGCCTTCCAGA 118893 ||| |||| ||||| || | ||||| Sbjct 100069 GGG-CTTGAAGAATGGCGTACCAGA 100046 >seq549 Length=285283 Score = 107 bits (118), Expect = 2e-18 Identities = 162/227 (71%), Gaps = 10/227 (4%) Strand=Plus/Plus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || ||| | |||||||| || ||||| ||||| || |||||| || || Sbjct 206993 GGCAAAGTCGGTGTGCATTCCCTCGTCGCGAGAGATAAGTTCGTTGGAGAAGGTCAAGCC 207052 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 ||||||||||| |||||||| | |||||| || | ||| | ||| ||||||||| Sbjct 207053 GGGCATGAGACCGCGCTTCTTGAGCCAGAAGATAGATGCAAAGGCGCCGCTGAAGAAGAT 207112 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG-AGCGGGACTTTGT-ATC- 130191 ||||| ||| ||||| || | ||||||| ||||||| || | |||| ||| Sbjct 207113 ACCCTCGACAGCTGCGAATGCGACGAGACGCGATGCAAAGGTAGAG-----TTGTCATCG 207167 Query 130192 --AAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGAC 130236 || |||||||| ||||| | ||||| || ||| || ||||| Sbjct 207168 CAAATCCACTTCAGTGCCCAGTCGGCCTTCTTGCGGATGCAGGGGAC 207214 >seq413 Length=134486 Score = 87.8 bits (96), Expect = 2e-12 Identities = 164/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 14234 TTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGT-TGATTTTCACGGGCAAC 14292 || || | |||||| |||||||| ||||||| ||| || ||| || | ||| | || Sbjct 30986 TTCCCAATGGCGTCGATTTCATCAATGAAAATGATGCAAGGTGTGTTCTTC-CTCGCGGT 30928 Query 14293 TTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGC 14352 | || | |||||| || | | |||||||||||||||||||||||| || | | Sbjct 30927 GGCGAACAGATCTCGAACACGAGATGGACCGACACCCACAAACATCTCCACGAACTCAGA 30868 Query 14353 GGCG-GAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGG 14411 | || ||| | || ||| || || |||||| || || | ||| |||||| || | Sbjct 30867 GCCGCTCACACT-GAAGAATGGAACACCAGATTCGCCAGCTGTTGCTTTGGCGAGCAGCG 30809 Query 14412 TCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCA 14467 |||| || || || || ||| | |||| |||||| || || ||| | |||||| Sbjct 30808 TCTTGCCAGTTCCAGGAGGCCCAGAAAGAATGGCACCGCGAGGAATCTTCGCACCA 30753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618424276888280