Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148305.1_202016-10-31] 1,413 sequences; 60,939,407 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq782 271 9e-68 seq549 131 2e-25 seq413 93.3 5e-14 >seq782 Length=233898 Score = 271 bits (300), Expect = 9e-68 Identities = 1148/1798 (64%), Gaps = 85/1798 (5%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 ||||| | ||| ||||||| ||||| |||| ||||| || || |||||||| |||| | Sbjct 99331 CCACAACATATGATCATGCGTGTGGCAGTCGGCATTCACGGAGAGGACATTGAATCTGCC 99390 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | |||||||| || | ||||| | | || |||| ||||| | || || || || Sbjct 99391 ATACAGACATACAACTACATGTCTAACAAATAC-TTCACGCACGCCTCCCCTACACTTTT 99449 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| || || ||||| ||| ||| | || ||||||||| || | || |||||||| Sbjct 99450 CAACGCAGGCACACCTCAACCGCAACTCTCGTCTTGCTTCCTCATTGACACGAAGGAGGA 99509 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 | ||| | |||||||| | || || | | ||||| || |||||| ||||| Sbjct 99510 CAGCATCGAGGGTATCTACGACACCCTCAAGACTTGTGCTATGATTTCAAAGACCGCTGG 99569 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 104520 ||||| || | |||| ||| | |||||| | ||| ||| | || ||||| Sbjct 99570 TGGTATCGGCCTTAACATACATCGCATCCGAGCCACTGGATCATACATTGGAGGAACAAA 99629 Query 104521 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580 || ||| | ||| || |||| ||||| || || ||| |||| || || ||||| || Sbjct 99630 CGGCACATCGAACGGTCTTGTTCCTATGCTCCGTGTCTTTGACGCGACTGCTCGCTACGT 99689 Query 104581 AAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCA 104634 |||||| ||| ||||| | || |||| |||| || ||||||||||| Sbjct 99690 TGATCAAGGTGGCAACAAGCGTCCTGGTGCAT---TCGCCATCTACCTCGAGCCATGGCA 99746 Query 104635 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTG 104694 ||| ||| || | | | | || || | ||||| || | || || ||||| || Sbjct 99747 CGCCGATGTCTTCAACTGGTTAGATCTGAGAAAGAACCACGGCAAAGAAGAAGCGCG-TG 99805 Query 104695 C-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753 | || ||||| |||| || | |||||||| || || ||||||||| | || || ||| Sbjct 99806 CTCGTGATCTTTTCTATGCCTTGTGGATTCCCGACCTGTTCATGAAGCGCGTCGAACAGA 99865 Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTG 104813 |||| | ||| ||||| | || || || || |||||||| ||||| | |||| Sbjct 99866 ATGGCGACTGGACTCTCATGTGCCCTCACGAGTGCCCTGGTCTTGCCGATATCTACGGTG 99925 Query 104814 AGGAGTTTGAA---------------------GCC-------CTTTAC----------AC 104835 | ||||| ||| ||| ||| || || Sbjct 99926 ACGAGTTCGAAGCTCTCTACGAGAAGTAAGTTGCCACAAGTGCTTGACTACCGCCAATAC 99985 Query 104836 AAA----------GTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCCGATG 104885 || ||||||| ||||||| || | || || | | || | Sbjct 99986 TAACCGCTCCCAGGTACGAGAAAGAAGGCCGTGGCCGTGAAACTATCCGTGCCCAAAAGC 100045 Query 104886 TGTGGAAAGCTATTCT-CAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAA 104944 | ||| | || ||||| |||| | || ||||||||||| | || | ||||||||||||| Sbjct 100046 TCTGGTACGCCATTCTTCAAGCC-CAGACCGAGACTGGCAACCCTTTCATGCTTTACAAA 100104 Query 104945 GACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTC 105004 || || || |||| ||||| ||||| ||||| ||||| || || |||||||| Sbjct 100105 GATGCTTGCAACCGCAAGAGCAATCAGAAGAACTTGGGAACCATTCGCAGCTCCAATCTG 100164 Query 105005 TGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCA 105064 || || || ||| | || | | | |||||| ||||| || ||| | ||||| Sbjct 100165 TGCACTGAGATCATTGAGTACTCTGCGCCTGATGAGGTTGCTGTTTGCAACTTGGCATCC 100224 Query 105065 ATCGCTCTCCCCAAGTATGTGGA--TCCAGAGACAAAGACATTTGATTATGAAAAACTCC 105122 || ||| | || | | || || | || | | | | | ||||| | || | | Sbjct 100225 ATGGCTTTGCCAACCTTCGTTGACGTTCAACG-CGGCGTC-TATGATTTCAACAAGTTGC 100282 Query 105123 ACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACC 105182 ||||||| | ||||||| ||| | |||| | ||||| || || | Sbjct 100283 ACGAAGTCGTCCAGACTGTCATTCGCAACTTGAACAAGATCATTGACGTCAACCACTATC 100342 Query 105183 CCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGG 105242 ||||| || || || | |||||||| | ||| | ||||| |||| Sbjct 100343 CCGTTCCCGAAGCATACAACAGCAACTCCCGTCACCGTCCCGTCGGTGTTGGTGTACAGG 100402 Query 105243 GTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAA 105302 |||| || |||| ||| || | ||||| | || || || ||| || ||| | Sbjct 100403 GTCTTGCTGATGCTTTCCTTGCTCTTCGCCTGCCCTTCGAGTCTCCCGAGGCAAAGAAGC 100462 Query 105303 TCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAG--AGTT 105360 |||| | || || |||||||| || || ||||| ||||| | | | | || | Sbjct 100463 TCAACATTCAAATCTTCGAGACCATTTACCATGCCGC-CTTGAC-CTCTTCCTGCAAGCT 100520 Query 105361 GGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCT 105420 ||| | | || || |||| |||||| ||||| ||||||| ||| || || | || Sbjct 100521 TGCACAAGAAGAAGGCACATACAAAACCTACGAGGGCTCTCCAGTTTCCCAGGGTATTCT 100580 Query 105421 TCAATTTGATATGTGGGAAGGTGAGACCAA-GCTTCACTACGACTGGGAAGCTCTCAAGG 105479 || | || |||||| || || | || | | || || |||||||| | ||||||| Sbjct 100581 CCAGTACGACATGTGG-AACGTCACTCCTACGGATCTCTGGGACTGGGACTCGCTCAAGG 100639 Query 105480 AACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCT 105539 |||||| || | ||| |||| ||| || || | ||||| |||||||| || | Sbjct 100640 CTGATATCAAGAAGCACGGTATTCGCAACTCACTTCTTGTTGCTCCTATGCCAACTGCTT 100699 Query 105540 CCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTA-T 105598 |||| | ||||| | ||| || || ||||| || || |||||| | || ||||| | Sbjct 100700 CCACATCTCAAATTCTCGGTTTCAACGAGTGCTTCGAGCCATACACGTCAAATATCTACT 100759 Query 105599 CTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCAT--CTCGTGGATGACC 105656 || | | || || || || || | |||||| ||| || | | || | Sbjct 100760 CTC-GTCGTGTGCTTGCTGGGGAATTCCAAGTCGTCAACC--CATGGCTGCTCAAAGATC 100816 Query 105657 TCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTGAAAGCGGGTGGTT 105716 || ||||| ||||| ||||| | | |||||| ||| || | || |||||||| Sbjct 100817 TCGTCGAGATGGGTCTTTGGTCGGACAACATGAAGAATCGTATCATTGCAGAGGGTGGTT 100876 Query 105717 CCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTGTACCGCACAGTTTGGG 105776 | || || || ||| ||||||| |||| || ||| | ||| || ||||||| Sbjct 100877 CTATCCAGAACATTCCTAATATTCCCGATGATATCAAGGCCCTTTACAAGACGGTTTGGG 100936 Query 105777 AAATCAAGATGAAGGATGTCATTGACA---TGGCCGCAGATCGTGGTCGCTTCATTGATC 105833 |||||| || | |||| || |||| || |||||||| ||||||||||| Sbjct 100937 AAATCAGCC---AGCGTACCATTATCACCATGGCTGCGGATCGTGGCGCCTTCATTGATC 100993 Query 105834 AAAGTCAAAGTATGAATCTCTTCATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGC 105893 || ||| || |||| | |||| || || || ||| |||| | |||| |||| Sbjct 100994 AATCTCAGAGCTTGAACATTCACATGAAAGAGCCGACCATGGGCAAGATTACTTCCATGC 101053 Query 105894 ACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACCTCCGATCTAAGGC 105951 || | ||||||||| ||||||||| || || ||||| ||||||||| | | ||| Sbjct 101054 ACTTTGCTGGTTGGAAGATGGGTCTCAAGACTGGAATGTACTACCTCCGAACCATGGC 101111 >seq549 Length=285283 Score = 131 bits (144), Expect = 2e-25 Identities = 167/226 (74%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAGTC 94790 ||| || || || | ||||| || || ||||| |||||||| || ||| || || Sbjct 207215 AGTCCCCTGCATCCGCAAGAAGGCCGACTGGGCACTGAAGTGGATTTGCGATGACAACTC 207156 Query 94791 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850 | ||||||| ||| ||| ||||||| || ||| ||||||||||||||| || Sbjct 207155 ---TACCTTTGCATCGCGTCTCGTCGCATTCGCAGCTGTCGAGGGTATCTTCTTCAGCGG 207099 Query 94851 TTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 94909 |||| ||| |||| | |||||||||||||| ||||||||||| || | ||||| Sbjct 207098 CGCCTT-TGCATCTATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCTTGACCTTCT 207040 Query 94910 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||||| ||||||||||| ||||||||| | ||| || ||||| Sbjct 207039 CCAACGAACTTATCTCTCGCGACGAGGGAATGCACACCGACTTTGC 206994 >seq413 Length=134486 Score = 93.3 bits (102), Expect = 5e-14 Identities = 245/367 (67%), Gaps = 23/367 (6%) Strand=Plus/Minus Query 9575 TTCGTCGCGGCGATGACAACAATACCTGTTTCAT--TATCAAAACCATCCATCTCTGTCA 9632 ||||| | || || || |||| |||||| | | | | ||||||||||| ||||||| Sbjct 31109 TTCGTACCCGCAATAACCACAA--CCTGTTCCGTGGTGTTGAAACCATCCATTTCTGTCA 31052 Query 9633 AAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTT 9692 | ||||| | || ||||||||||||||| | ||| ||| || || Sbjct 31051 GGATCTGGTTGAGCGTGCTTTCCCGTTCATCATTTCC------ACCGCCAAAGTTGTTTT 30998 Query 9693 GC--------TTTCCCAC-GGCATCAATCTCATCAATGAAGACGATGCATGGT-TGATTT 9742 | ||||||| ||| || || ||||||||||| | |||||| ||| || | | Sbjct 30997 TCGATCTCGATTTCCCAATGGCGTCGATTTCATCAATGAAAATGATGCAAGGTGTGTTCT 30938 Query 9743 TCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCC 9802 || | ||| | || ||||| || ||||| | || ||||| |||||||||||| Sbjct 30937 TC-CTCGCGGTGGCGAACAGATCTCGAACACGAGATGGACCGACACCCACAAACATCTCC 30879 Query 9803 ACAAAGTTTGCGGCG-GAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCG 9861 || || | | | || ||| | || ||| || ||| |||||| || || | ||| Sbjct 30878 ACGAACTCAGAGCCGCTCACACT-GAAGAATGGAACACCAGATTCGCCAGCTGTTGCTTT 30820 Query 9862 GGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTT 9921 |||||| || ||||| || || || || || | || | |||||| || |||||||| Sbjct 30819 GGCGAGCAGCGTCTTGCCAGTTCCAGGAGGCCCAGAAAGAATGGCACCGCGAGGAATCTT 30760 Query 9922 GGCGCCA 9928 || ||| Sbjct 30759 CGCACCA 30753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583250498156120