Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148305.1_202016-10-31] 1,413 sequences; 60,939,407 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq782 174 2e-38 seq549 91.5 2e-13 >seq782 Length=233898 Score = 174 bits (192), Expect = 2e-38 Identities = 402/598 (67%), Gaps = 16/598 (3%) Strand=Plus/Plus Query 19116 TCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGA----GACA 19171 ||||||| || || |||||||| || || || ||| | || || || | |||| Sbjct 99344 TCATGCGTGTGGCAGTCGGCATTCACGGAGAGGACATT----GAATCTGCCATACAGACA 99399 Query 19172 TACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGT 19231 ||| || ||| | || | |||||||||||| | || || ||||||||||| || Sbjct 99400 TACAACTACATGTCTAACAAATACTTCACGCACGCCTCCCCTACACTTTTCAACGCAGGC 99459 Query 19232 ACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAG 19291 || | ||||| | ||| || ||||| | | | |||||| |||||||| ||| Sbjct 99460 ACACCTCAACCGCAACTCTCGTCTTGCTTCCTCATTGACACGAAGGAGGACAGCATCGAG 99519 Query 19292 GGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGG 19351 || |||||||| || |||||| || || || || ||| | || |||||||| Sbjct 99520 GGTATCTACGACACCCTCAAGACTTGTGCTATGATTTCAAAGACCGCTGGTGGTATCGGC 99579 Query 19352 ATCCAC-TGC-TCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAG 19409 | || | | ||| || ||| | | ||| || || || || ||||| | Sbjct 99580 CTTAACATACATCGCAT--CCGAGCCACTGGATCATACATTGGAGGAACAAACGGCACAT 99637 Query 19410 CCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGG 19469 | ||||| | || || |||||||| ||||| || || || | ||||| | || | Sbjct 99638 CGAACGGTCTTGTTCCTATGCTCCGTGTCTTTGACGCGACTGCTCGCTACGTTGATCAAG 99697 Query 19470 GGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCA 19529 | ||| ||| || || | ||||||||||||||||||||||||||||| || ||| Sbjct 99698 GTGGCAACAAGCGTCCTGGTGCATTCGCCATCTACCTCGAGCCATGGCACGCCGATGTCT 99757 Query 19530 TGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGC-TG-TCGCGACCT 19587 | | | | || ||| | |||||| || | || ||| |||| || ||| || || Sbjct 99758 TCAACTGGTTAGATCTGAGAAAGAACCACGGCAA--AGAAGAAGCGCGTGCTCGTGATCT 99815 Query 19588 CTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATG 19647 ||| |||||||||||||| ||||| |||||| || || || || | | || || Sbjct 99816 TTTCTATGCCTTGTGGATTCCCGACCTGTTCATGAAGCGCGTCGAACAGAATGGCGACTG 99875 Query 19648 GCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTC 19705 | || |||||||| ||||| |||||||| || |||| ||||||| || | |||| Sbjct 99876 GACTCTCATGTGCCCTCACGAGTGCCCTGGTCTTGCCGATATCTACGGTGACGAGTTC 99933 Score = 163 bits (180), Expect = 3e-35 Identities = 899/1430 (63%), Gaps = 90/1430 (6%) Strand=Plus/Minus Query 78534 GTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGA 78593 |||||| || | |||||| |||||||| ||||||| || | || || | || || Sbjct 100758 GTAGATATTTGACGTGTATGGCTCGAAGCACTCGTTGAAACCGAGAATTTGAGATGTGGA 100699 Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGAC 78653 || || ||||| || || || || || || || |||| ||| ||| ||||||| || | Sbjct 100698 AGCAGTTGGCATAGGAGCAACAAGAAGTGAGTTGCGAATACCGTGCTTCTTGATATCAGC 100639 Query 78654 CTTTAGG------CCGTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAG 78707 ||| || | |||||| | || | | | || ||||||||| || || Sbjct 100638 CTTGAGCGAGTCCCAGTCCCAGAGATCCGTAGGAGTGACGTTCCACATGTCGTACTGGAG 100579 Query 78708 GATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTG-GCGA 78766 ||||||| ||| | || || |||| | | || | ||| | | ||| || |||| || | Sbjct 100578 AATACCCTGGGAAACTGGAGAGCCCTCGTAGGTTTTGTATG-TGCCTTCTTCTTGTGCAA 100520 Query 78767 GTTCGCATGACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCT 78826 | | ||| || | || ||| || ||||| | | ||||||||| ||||||||| Sbjct 100519 GCTTGCAGGAAGAGGTCAAGGCGGCATGGTAAATGGTCTCGAAGATTTGAATGTTGAGCT 100460 Query 78827 CGCGCGCCTTGGTCTCGTCGAACGAAAGGCC--GAGCATCATGAAGACATCGGCCAGGCC 78884 |||| || ||||| | |||| ||||| | ||| |||| || || || Sbjct 100459 TCTTTGCCTCGGGAGACTCGAAGGGCAGGCGAAGAGCA--AGGAAAGCATCAGCAAGACC 100402 Query 78885 CTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGT--C 78942 ||| || || | | ||| || ||||| || |||||| || | || |||| | Sbjct 100401 CTGTACACCAACACCGACGGGACGGTGACGGGAGTTGCTGTT---GTATGCTTCGGGAAC 100345 Query 78943 GGG-TAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTC 79001 ||| || ||| || |||| ||||| ||| || |||| | | || || Sbjct 100344 GGGATAGTGGTTGACGTCAATGATCTTGTTCAAGTTGCGAATGACAGTCTGGACGACTTC 100285 Query 79002 GTACAATTTGGCGAAATCAAAATGATTTC-CTTTGA---TGAAAGTCGGTAGGCACAGC- 79056 || ||| ||| ||||||| | || | | |||| | || | ||| |||| ||| Sbjct 100284 GTGCAACTTGTTGAAATCATA--GACGCCGCGTTGAACGTCAACGAAGGTTGGCAAAGCC 100227 Query 79057 ---GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTG 79113 ||||||| |||||| || || ||| || || ||| ||| ||||| || ||| Sbjct 100226 ATGGATGCCAAGTTGCAAACAGCAACCTCATCAGGCGCAGAGTACTCAATGATCTCAGTG 100167 Query 79114 CACAAATTAGA----CGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACA 79169 |||| ||| || ||| ||||| || | ||||||||| |||||||| ||| || Sbjct 100166 CACAGATTGGAGCTGCGA----ATGGTTCCCAAGTTCTTCTGATTGCTCTTGCGGTTGCA 100111 Query 79170 GGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGA-GAACGCCGT 79228 || || ||||| |||| | || | || ||||| ||| ||||| ||| | ||| Sbjct 100110 AGCATCTTTGTAAAGCATGAAAGGGTTGCCAGTCTCGGTCTGGG-CTTGAAGAATGGCGT 100052 Query 79229 CCCAGATGTCCCGGGCCCGGACAA--------------CCTTCTT----GTACC------ 79264 ||||| | |||| |||| | ||||||| ||||| Sbjct 100051 ACCAGAGCTTTTGGGCACGGATAGTTTCACGGCCACGGCCTTCTTTCTCGTACCTGGGAG 99992 Query 79265 -----------------------GACCCTGTG-CGACGTACGTCCGGTACAACTCGTTGA 79300 | | |||| | || ||| || ||| | | | || Sbjct 99991 CGGTTAGTATTGGCGGTAGTCAAGCACTTGTGGCAACTTACTTCTCGTAGAGAGCTTCGA 99932 Query 79301 AAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGT 79360 | | || || |||| ||||| || || ||||||||||| |||||||| || ||||| Sbjct 99931 ACTCGTCACCGTAGATATCGGCAAGACCAGGGCACTCGTGAGGGCACATGAGAGTCCAGT 99872 Query 79361 CCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGT 79420 | | | || || || || |||||| ||||| || ||||||| ||| ||| || | Sbjct 99871 CGCCATTCTGTTCGACGCGCTTCATGAACAGGTCGGGAATCCACAAGGCATAGAAAAGAT 99812 Query 79421 CGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGT 79480 | || |||| || || | ||| |||||| | ||| || | ||| | || | Sbjct 99811 CACGAGCACGCGCTTCTTCTTTGCCGTGGTTCTTTCTCAGATCTAACCAGTTGAAGACAT 99752 Query 79481 CGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGT 79540 |||||||||| ||||| || ||||||||||| | ||| |||||| ||| || || | Sbjct 99751 CGGCGTGCCATGGCTCGAGGTAGATGGCGAATGCACCAGGACGCTTGTTGCCACCTTGAT 99692 Query 79541 TGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGC 79600 ||||| || || || || || || |||||||| || || | |||| | || Sbjct 99691 CAACGTAGCGAGCAGTCGCGTCAAAGACACGGAGCATAGGAACAAGACCGTTCGATGTGC 99632 Query 79601 CGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGA-GCA-GTGGATTCCGAT 79658 |||| || || || || || | || || ||| ||| | | || | ||||| Sbjct 99631 CGTTTGTTCCTCCAATGTATGATCCAGTGGCTCGGATG--CGATGTATGTTAAGGCCGAT 99574 Query 79659 GCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGAT 79718 || || | ||| || || || || |||||| || |||||||| |||||||| Sbjct 99573 ACCACCAGCGGTCTTTGAAATCATAGCACAAGTCTTGAGGGTGTCGTAGATACCCTCGAT 99514 Query 79719 CGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGC 79778 ||| |||||| | | | |||||||| ||| | || || | || || || Sbjct 99513 GCTGTCCTCCTTCGTGTCAATGAGGAAGCAAGACGAGAGTTGCGGTTGAGGTGTGCCTGC 99454 Query 79779 GTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTC 79838 |||||| || || || | |||||||||||| | || | ||| | ||| |||| Sbjct 99453 GTTGAAAAGTGTAGGGGAGGCGTGCGTGAAGTATTTGTTAGACATGTAGTTGTATGTCTG 99394 Query 79839 CTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGA 79888 || | | ||| || ||||| |||||||| || || ||||||| Sbjct 99393 TATGGCAGATTCAATGTCCTCTCCGTGAATGCCGACTGCCACACGCATGA 99344 >seq549 Length=285283 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 |||||| |||||| | || || ||| || || || ||||||||| ||| | || Sbjct 207151 TTTGCATCGCGTCTCGTCGCATTCGCAGCTGTCGAGGGTATCTTCTTCAGCGGCGCCTTT 207092 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 |||| ||||||||||| ||||| || |||||||| ||| ||| ||||||||||| Sbjct 207091 GCATCTATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCTTGACCTTCTCCAACGAA 207032 Query 60093 CTGATTTCCCGGGACGAGGG 60112 || || || || |||||||| Sbjct 207031 CTTATCTCTCGCGACGAGGG 207012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548515111680720