Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq10 194 2e-44 >seq10 Length=848763 Score = 194 bits (214), Expect = 2e-44 Identities = 592/903 (66%), Gaps = 18/903 (2%) Strand=Plus/Plus Query 53951 TCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 54010 |||||||| || || | |||| | | | ||||| ||||| ||||| | | | | Sbjct 460774 TCAAACTCTTCGCCGTAGACATCGGCGAGGCCAGGTGCTTCATTGGGACAGAAGAGTGTC 460833 Query 54011 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 54069 ||| || | | | ||||||||||| || |||||||| |||| | ||| ||| || Sbjct 460834 CACATACCATTCTGTTCAACTCGTTTCATGAACAGATCAGGCGTCCACAAAGC-ATAGAA 460892 Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 54129 ||||| | | | | || || || || ||||| | || || | | | Sbjct 460893 GAGATCACGAGCACGGTTCTCTTCCTTACCGTGGTTCTTGCGCAAGTCAAGCCAGCCAAA 460952 Query 54130 AATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCC 54189 ||| |||| |||||| || || | ||| |||| | | | || || || ||||| || || Sbjct 460953 AATGTCAGCATGCCATGGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCTTGTTGCCACC 461012 Query 54190 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 54249 |||||| | |||| ||||||| || || || | |||||| ||||| | ||| ||||| Sbjct 461013 CTGATCAACATATCGAGCGGTGGCATCGTAGACACGCAACATAGGAATTAGACCGTTGGA 461072 Query 54250 TGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT----TACTAATTGATA 54305 || || ||||| || || || ||| | |||||||| ||| || | Sbjct 461073 TGTGCCGTTGGTACCACCAATGTACGAACCAGTCGCACGAATGCGGTGTACG--TTCA-- 461128 Query 54306 GACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 54365 |||| || || || || | || || || | || || || | ||| || ||||||| Sbjct 461129 GACCGATGCCACCGGCAGTCTTTGAAATCATAGCACAGGTCTTGAGCGTGTCGTAGATGC 461188 Query 54366 CCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG--GTGACGACT 54423 ||||||| || || ||| |||| | | || || ||| || | || | |||| | Sbjct 461189 CCTCTATGCTGTCCTCCTTCATATCGATGAGGAAGCAGGAGGAGAGCTGCGGCGACGGC- 461247 Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAA-GTAGAT 54482 || || |||||||| | || ||||| ||||| || || | || | || | |||| | Sbjct 461248 -GTGCCAGCATTAAACAGAGTGGGAGACGCGTGTGTGAAGTACTTATTCGACATGTAG-T 461305 Query 54483 TGTACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATT 54541 ||| ||||| || || || || || || | || || || || || |||||||| Sbjct 461306 CGTAAGTCTCAATGGCACTCTCAATGTCTTCACCG-TGTATGCCAACCGCAACACGCATA 461364 Query 54542 AACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCC 54601 | ||||||||| ||||| || | | |||| || ||| || | |||||| | ||| Sbjct 461365 ATCATGTGCTGTGGTCTCTCTGCCACCTTGCCATTGATTCGGAGAAGGTAGGACCTCTCC 461424 Query 54602 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTG 54661 || ||||| || |||||||| | ||| ||||| || ||||||| || | ||||| Sbjct 461425 AATGTTTTGAAGCCAAAATACTGGTAGTTGAAGTCACGGTCGTAAACGATGGCCGAGTTC 461484 Query 54662 AGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTTGAAATAATCGGAGAATGT 54721 || | ||| | || | | | ||| ||| | | || || || || | || Sbjct 461485 AGCTCGTCCGCGTGCTTCATGATGATATCATACGTAGTCTTCGAGATCATAGGGCAGTGC 461544 Query 54722 TTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATCACTTCACTAAATAGtttt 54781 || || ||||| || ||||||||||| | | ||| | || ||| | |||| | ||| Sbjct 461545 TTGCCGTTTTTTGGGTTGACATAGTTGTAGAGATCATCGATGACTGCCGAAAATTGCTTT 461604 Query 54782 tttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGA 54841 || |||| ||||| || || ||||||||||| | || || || | || || || ||| Sbjct 461605 TTAGTTTGCTTGTGAAGGTTCGATACGGCTATACGTGCAGCGAGCACAGCGTAGTCTGGA 461664 Query 54842 TGT 54844 ||| Sbjct 461665 TGT 461667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593718876302160