Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23]
367 sequences; 31,780,469 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq10 194 2e-44
>seq10
Length=848763
Score = 194 bits (214), Expect = 2e-44
Identities = 592/903 (66%), Gaps = 18/903 (2%)
Strand=Plus/Plus
Query 53951 TCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 54010
|||||||| || || | |||| | | | ||||| ||||| ||||| | | | |
Sbjct 460774 TCAAACTCTTCGCCGTAGACATCGGCGAGGCCAGGTGCTTCATTGGGACAGAAGAGTGTC 460833
Query 54011 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 54069
||| || | | | ||||||||||| || |||||||| |||| | ||| ||| ||
Sbjct 460834 CACATACCATTCTGTTCAACTCGTTTCATGAACAGATCAGGCGTCCACAAAGC-ATAGAA 460892
Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 54129
||||| | | | | || || || || ||||| | || || | | |
Sbjct 460893 GAGATCACGAGCACGGTTCTCTTCCTTACCGTGGTTCTTGCGCAAGTCAAGCCAGCCAAA 460952
Query 54130 AATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCC 54189
||| |||| |||||| || || | ||| |||| | | | || || || ||||| || ||
Sbjct 460953 AATGTCAGCATGCCATGGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCTTGTTGCCACC 461012
Query 54190 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 54249
|||||| | |||| ||||||| || || || | |||||| ||||| | ||| |||||
Sbjct 461013 CTGATCAACATATCGAGCGGTGGCATCGTAGACACGCAACATAGGAATTAGACCGTTGGA 461072
Query 54250 TGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT----TACTAATTGATA 54305
|| || ||||| || || || ||| | |||||||| ||| || |
Sbjct 461073 TGTGCCGTTGGTACCACCAATGTACGAACCAGTCGCACGAATGCGGTGTACG--TTCA-- 461128
Query 54306 GACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 54365
|||| || || || || | || || || | || || || | ||| || |||||||
Sbjct 461129 GACCGATGCCACCGGCAGTCTTTGAAATCATAGCACAGGTCTTGAGCGTGTCGTAGATGC 461188
Query 54366 CCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG--GTGACGACT 54423
||||||| || || ||| |||| | | || || ||| || | || | |||| |
Sbjct 461189 CCTCTATGCTGTCCTCCTTCATATCGATGAGGAAGCAGGAGGAGAGCTGCGGCGACGGC- 461247
Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAA-GTAGAT 54482
|| || |||||||| | || ||||| ||||| || || | || | || | |||| |
Sbjct 461248 -GTGCCAGCATTAAACAGAGTGGGAGACGCGTGTGTGAAGTACTTATTCGACATGTAG-T 461305
Query 54483 TGTACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATT 54541
||| ||||| || || || || || || | || || || || || ||||||||
Sbjct 461306 CGTAAGTCTCAATGGCACTCTCAATGTCTTCACCG-TGTATGCCAACCGCAACACGCATA 461364
Query 54542 AACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCC 54601
| ||||||||| ||||| || | | |||| || ||| || | |||||| | |||
Sbjct 461365 ATCATGTGCTGTGGTCTCTCTGCCACCTTGCCATTGATTCGGAGAAGGTAGGACCTCTCC 461424
Query 54602 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTG 54661
|| ||||| || |||||||| | ||| ||||| || ||||||| || | |||||
Sbjct 461425 AATGTTTTGAAGCCAAAATACTGGTAGTTGAAGTCACGGTCGTAAACGATGGCCGAGTTC 461484
Query 54662 AGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTTGAAATAATCGGAGAATGT 54721
|| | ||| | || | | | ||| ||| | | || || || || | ||
Sbjct 461485 AGCTCGTCCGCGTGCTTCATGATGATATCATACGTAGTCTTCGAGATCATAGGGCAGTGC 461544
Query 54722 TTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATCACTTCACTAAATAGtttt 54781
|| || ||||| || ||||||||||| | | ||| | || ||| | |||| | |||
Sbjct 461545 TTGCCGTTTTTTGGGTTGACATAGTTGTAGAGATCATCGATGACTGCCGAAAATTGCTTT 461604
Query 54782 tttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGA 54841
|| |||| ||||| || || ||||||||||| | || || || | || || || |||
Sbjct 461605 TTAGTTTGCTTGTGAAGGTTCGATACGGCTATACGTGCAGCGAGCACAGCGTAGTCTGGA 461664
Query 54842 TGT 54844
|||
Sbjct 461665 TGT 461667
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593718876302160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |