Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq15 190 2e-43 seq23 107 2e-18 seq2 102 8e-17 seq9 84.2 2e-11 >seq15 Length=603150 Score = 190 bits (210), Expect = 2e-43 Identities = 214/283 (76%), Gaps = 5/283 (2%) Strand=Plus/Plus Query 116639 TGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCC 116698 |||||||||||||| ||||| ||| || |||||||| | |||||| | || |||||| Sbjct 375449 TGGCGCATGTACAAGAAGGCAATGGCATCCTTCTGGACTGCAGAGGAGATCGATCTGTCC 375508 Query 116699 AAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAGCAC 116755 ||||||| |||||| | || | ||||| |||||||| |||||| |||| Sbjct 375509 AAGGACATTCCTGACTGGAACAACCGTCTTAACGATGACGAGCGCTTCTTCATCTCGCAC 375568 Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTC 116815 | || ||||| |||||||| || |||||||| |||||||| || ||||| || ||| Sbjct 375569 ATCCTCGCCTTCTTCGCCGCGTCGGATGGCATCGTGAACGAGAACCTAGTCGAACGCTTC 375628 Query 116816 -GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGA 116874 || ||| || | ||| | | ||||| || |||||||||||||| ||||| |||||||| Sbjct 375629 AGCGCAGAAG-TACAGATTCCAGAGGCACGCTGCTTCTACGGCTTCCAGATTGCCATGGA 375687 Query 116875 GAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||| | ||||| || | ||| ||| || |||||||||||| Sbjct 375688 GAACATTCACTCCGAGACGTACTCGCTGCTTATCGACACGTAC 375730 Score = 185 bits (204), Expect = 9e-42 Identities = 317/454 (70%), Gaps = 12/454 (3%) Strand=Plus/Plus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 ||||||| || |||||||| ||||||||| | | ||| | || |||||| | |||| Sbjct 375855 AGAAGGCTGACTGGGCGCTCCGCTGGATCTCTGACAGCAACTCCACCTTCGCCTCACGCC 375914 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 | | |||||||| ||||| |||||| ||||||| || || || || |||| || | Sbjct 375915 TCATCGCCTTCGCTGCCGTGGAGGGCATCTTCTTCTCTGGTGCCTTTGCTTCCATCTTCT 375974 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| || || |||||||| ||| |||| ||| |||||||||||| || | | Sbjct 375975 GGCTTAAGAAGCGAGGTCTCATGCCGGGCTTGACCTTCTCCAACGAGCTCATTTCACGCG 376034 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221 |||||||| |||| |||||| ||||| |||| ||| |||| || | || | | Sbjct 376035 ACGAGGGTATGCACACCGACTTCGCCTGCCTGCTCTTC-AGCA--TGATTCA--AAATAA 376089 Query 117222 GCGCGGCGC--GCGTCAGGGAG----ATCGTCACCGACGCGGTCGCCATCGAGCAGCGCT 117275 || || | | | ||| | | | ||| ||||||| || ||| |||||||| | | Sbjct 376090 GC-CGTCTCCAGAGTCGGTGCGTGCCATCATCACCGAGGCTGTCTCCATCGAGAAAGAGT 376148 Query 117276 TCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAAT 117335 ||||||||||||| ||||| || ||||| || | ||| || |||| || | Sbjct 376149 TCCTCACCGAAGCCCTGCCTTGCCGCCTGCTCGGTATGAATGCAGACCTTATGTGCCAGT 376208 Query 117336 ACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACA 117395 |||| ||||| || || ||| | |||| | | || | | | | ||| |||||| Sbjct 376209 ACATTGAGTTTGTAGCAGACCGCTTGCTCATGGCTCTCGGCAACACAAAGGTGTACAACG 376268 Query 117396 CGCCCAACCCGCTGGACTTTATGAACCTCATCTC 117429 || | |||||| | ||||| ||| | |||||| Sbjct 376269 CGACGAACCCGTTCGACTTCATGGAGAACATCTC 376302 >seq23 Length=461238 Score = 107 bits (118), Expect = 2e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773 || ||||| ||||||||| |||| ||||| | |||||| | | | | | ||| Sbjct 204487 ACTGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCGACACCATCGACAATGTTAAGACC 204546 Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || |||| ||||| ||||||||||| | |||||||| || || |||| ||| || ||| Sbjct 204547 AAGATTCAGGACAAGGAGGGCATCCCACCAGACCAGCAGCGCCTGATCTTCGCTGGTAAA 204606 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 ||||| || |||| ||||| || |||||||||||| ||||| Sbjct 204607 CAGCTCGAAGACGGCCGCACTCTGTCCGACTACAACATTCAGAA 204650 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || || |||||||| | || ||||| | | Sbjct 204865 ATGCAGATCTTCGTCAAGACTCTGACTGGAAAGACCATCACGCTTGAGGTCGAGTCATCT 204924 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| ||||| ||||||| ||||| ||||||||||| | ||||| Sbjct 204925 GATACCATCGATAACG-TCAAGACCAAAATTCAGGACAAGGAGGGCATCCCACCAGACCA 204983 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| || |||||||| || || | || || || |||||||| Sbjct 204984 GCAGCGCCTGATCTTCGCTGGTAAACAGCTCGAAGATGGCCGTACTCTGTCTGACTACAA 205043 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 || || |||||| | || ||||| || ||| Sbjct 205044 TATTCAAAAGGAGTCTACTCTGCACCTTGTG 205074 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || |||||||| || || || |||||| | || || ||| || | Sbjct 205093 ATGCAAATTTTCGTGAAGACGCTCACAGGAAAGACGATCACCCTAGAAGTTGAATCCTCA 205152 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || || | | ||| || |||| ||||| ||||| || || | || || Sbjct 205153 GACACGATTGACAATG-TGAAGACCAAGATTCAAGACAAGGAGGGTATTCCACCAGATCA 205211 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| || || || ||||| || | ||||| || |||||||| Sbjct 205212 GCAGCGCTTGATCTTCGCTGGTAAGCAACTGGAGGATGGTCGCACGCTGTCAGACTACAA 205271 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||| || |||||| | || ||||| Sbjct 205272 CATTCAAAAGGAGTCGACTCTGCA 205295 >seq2 Length=1312579 Score = 102 bits (112), Expect = 8e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 40684 CGAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAA 40743 ||| |||| || | ||||| || || ||||||||||| || |||||| | || || || Sbjct 554683 CGACAAATTCATAGCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAG 554624 Query 40744 GCCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCG 40803 | | || | | | | | ||| || || | ||||||||||| ||||| | Sbjct 554623 TCGTCGGATACGATCGACAATGTGAAGACCAAGATCCAGGACAAAGAGGGTATCCCACCA 554564 Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 |||||||| || | |||| || ||||| ||||| || || | |||||||| | |||| Sbjct 554563 GACCAGCAGCGCTTGATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTAAGCGAC 554504 Query 40864 TACAACATCCAGAAGG 40879 |||||||||||||||| Sbjct 554503 TACAACATCCAGAAGG 554488 >seq9 Length=905162 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||| || || | |||||||| || || |||| ||| ||||| || || || Sbjct 60770 GACAAGGAGGGTATTCCACCCGACCAGCAGCGTCTTATCTTCGCCGGCAAGCAACTTGAG 60829 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || | ||||| | ||||||||||||||| |||||| | |||||||| || || Sbjct 60830 GATGGCCGCACTTTGTCCGACTACAACATCCAAAAGGAGTCGACGCTGCACCTTGT 60885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515216836431920