Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23]
367 sequences; 31,780,469 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq15 190 2e-43
seq23 107 2e-18
seq2 102 8e-17
seq9 84.2 2e-11
>seq15
Length=603150
Score = 190 bits (210), Expect = 2e-43
Identities = 214/283 (76%), Gaps = 5/283 (2%)
Strand=Plus/Plus
Query 116639 TGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCC 116698
|||||||||||||| ||||| ||| || |||||||| | |||||| | || ||||||
Sbjct 375449 TGGCGCATGTACAAGAAGGCAATGGCATCCTTCTGGACTGCAGAGGAGATCGATCTGTCC 375508
Query 116699 AAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAGCAC 116755
||||||| |||||| | || | ||||| |||||||| |||||| ||||
Sbjct 375509 AAGGACATTCCTGACTGGAACAACCGTCTTAACGATGACGAGCGCTTCTTCATCTCGCAC 375568
Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTC 116815
| || ||||| |||||||| || |||||||| |||||||| || ||||| || |||
Sbjct 375569 ATCCTCGCCTTCTTCGCCGCGTCGGATGGCATCGTGAACGAGAACCTAGTCGAACGCTTC 375628
Query 116816 -GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGA 116874
|| ||| || | ||| | | ||||| || |||||||||||||| ||||| ||||||||
Sbjct 375629 AGCGCAGAAG-TACAGATTCCAGAGGCACGCTGCTTCTACGGCTTCCAGATTGCCATGGA 375687
Query 116875 GAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917
|||| | ||||| || | ||| ||| || ||||||||||||
Sbjct 375688 GAACATTCACTCCGAGACGTACTCGCTGCTTATCGACACGTAC 375730
Score = 185 bits (204), Expect = 9e-42
Identities = 317/454 (70%), Gaps = 12/454 (3%)
Strand=Plus/Plus
Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041
||||||| || |||||||| ||||||||| | | ||| | || |||||| | ||||
Sbjct 375855 AGAAGGCTGACTGGGCGCTCCGCTGGATCTCTGACAGCAACTCCACCTTCGCCTCACGCC 375914
Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101
| | |||||||| ||||| |||||| ||||||| || || || || |||| || |
Sbjct 375915 TCATCGCCTTCGCTGCCGTGGAGGGCATCTTCTTCTCTGGTGCCTTTGCTTCCATCTTCT 375974
Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161
|||| ||||| || || |||||||| ||| |||| ||| |||||||||||| || | |
Sbjct 375975 GGCTTAAGAAGCGAGGTCTCATGCCGGGCTTGACCTTCTCCAACGAGCTCATTTCACGCG 376034
Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221
|||||||| |||| |||||| ||||| |||| ||| |||| || | || | |
Sbjct 376035 ACGAGGGTATGCACACCGACTTCGCCTGCCTGCTCTTC-AGCA--TGATTCA--AAATAA 376089
Query 117222 GCGCGGCGC--GCGTCAGGGAG----ATCGTCACCGACGCGGTCGCCATCGAGCAGCGCT 117275
|| || | | | ||| | | | ||| ||||||| || ||| |||||||| | |
Sbjct 376090 GC-CGTCTCCAGAGTCGGTGCGTGCCATCATCACCGAGGCTGTCTCCATCGAGAAAGAGT 376148
Query 117276 TCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAAT 117335
||||||||||||| ||||| || ||||| || | ||| || |||| || |
Sbjct 376149 TCCTCACCGAAGCCCTGCCTTGCCGCCTGCTCGGTATGAATGCAGACCTTATGTGCCAGT 376208
Query 117336 ACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACA 117395
|||| ||||| || || ||| | |||| | | || | | | | ||| ||||||
Sbjct 376209 ACATTGAGTTTGTAGCAGACCGCTTGCTCATGGCTCTCGGCAACACAAAGGTGTACAACG 376268
Query 117396 CGCCCAACCCGCTGGACTTTATGAACCTCATCTC 117429
|| | |||||| | ||||| ||| | ||||||
Sbjct 376269 CGACGAACCCGTTCGACTTCATGGAGAACATCTC 376302
>seq23
Length=461238
Score = 107 bits (118), Expect = 2e-18
Identities = 122/164 (74%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773
|| ||||| ||||||||| |||| ||||| | |||||| | | | | | |||
Sbjct 204487 ACTGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCGACACCATCGACAATGTTAAGACC 204546
Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833
|| |||| ||||| ||||||||||| | |||||||| || || |||| ||| || |||
Sbjct 204547 AAGATTCAGGACAAGGAGGGCATCCCACCAGACCAGCAGCGCCTGATCTTCGCTGGTAAA 204606
Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877
||||| || |||| ||||| || |||||||||||| |||||
Sbjct 204607 CAGCTCGAAGACGGCCGCACTCTGTCCGACTACAACATTCAGAA 204650
Score = 107 bits (118), Expect = 2e-18
Identities = 152/211 (72%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || || || || |||||||| | || ||||| | |
Sbjct 204865 ATGCAGATCTTCGTCAAGACTCTGACTGGAAAGACCATCACGCTTGAGGTCGAGTCATCT 204924
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | | |||| ||||| ||||||| ||||| ||||||||||| | |||||
Sbjct 204925 GATACCATCGATAACG-TCAAGACCAAAATTCAGGACAAGGAGGGCATCCCACCAGACCA 204983
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || |||| ||| || |||||||| || || | || || || ||||||||
Sbjct 204984 GCAGCGCCTGATCTTCGCTGGTAAACAGCTCGAAGATGGCCGTACTCTGTCTGACTACAA 205043
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899
|| || |||||| | || ||||| || |||
Sbjct 205044 TATTCAAAAGGAGTCTACTCTGCACCTTGTG 205074
Score = 100 bits (110), Expect = 3e-16
Identities = 146/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || |||||||| || || || |||||| | || || ||| || |
Sbjct 205093 ATGCAAATTTTCGTGAAGACGCTCACAGGAAAGACGATCACCCTAGAAGTTGAATCCTCA 205152
Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | || || | | ||| || |||| ||||| ||||| || || | || ||
Sbjct 205153 GACACGATTGACAATG-TGAAGACCAAGATTCAAGACAAGGAGGGTATTCCACCAGATCA 205211
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || | |||| ||| || || || ||||| || | ||||| || ||||||||
Sbjct 205212 GCAGCGCTTGATCTTCGCTGGTAAGCAACTGGAGGATGGTCGCACGCTGTCAGACTACAA 205271
Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892
||| || |||||| | || |||||
Sbjct 205272 CATTCAAAAGGAGTCGACTCTGCA 205295
>seq2
Length=1312579
Score = 102 bits (112), Expect = 8e-17
Identities = 140/196 (71%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 40684 CGAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAA 40743
||| |||| || | ||||| || || ||||||||||| || |||||| | || || ||
Sbjct 554683 CGACAAATTCATAGCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAG 554624
Query 40744 GCCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCG 40803
| | || | | | | | ||| || || | ||||||||||| ||||| |
Sbjct 554623 TCGTCGGATACGATCGACAATGTGAAGACCAAGATCCAGGACAAAGAGGGTATCCCACCA 554564
Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863
|||||||| || | |||| || ||||| ||||| || || | |||||||| | ||||
Sbjct 554563 GACCAGCAGCGCTTGATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTAAGCGAC 554504
Query 40864 TACAACATCCAGAAGG 40879
||||||||||||||||
Sbjct 554503 TACAACATCCAGAAGG 554488
>seq9
Length=905162
Score = 84.2 bits (92), Expect = 2e-11
Identities = 88/116 (76%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||| ||||| || || | |||||||| || || |||| ||| ||||| || || ||
Sbjct 60770 GACAAGGAGGGTATTCCACCCGACCAGCAGCGTCTTATCTTCGCCGGCAAGCAACTTGAG 60829
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|| | ||||| | ||||||||||||||| |||||| | |||||||| || ||
Sbjct 60830 GATGGCCGCACTTTGTCCGACTACAACATCCAAAAGGAGTCGACGCTGCACCTTGT 60885
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515216836431920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |